Pairwise Alignments

Query, 898 a.a., translation initiation factor IF-2 from Vibrio cholerae E7946 ATCC 55056

Subject, 885 a.a., translation initiation factor IF-2 (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 1144 bits (2959), Expect = 0.0
 Identities = 609/901 (67%), Positives = 716/901 (79%), Gaps = 20/901 (2%)

Query: 1   MTQITVKALSEEIGTPVDRLLEQLADAGMNKAVADHVSEDEKQKLLAHLRKEHGDATGSE 60
           M   TV+ L+ E+G  V+RL+EQ + AG+ K  AD+VSE EKQ+LL +L+K+HG    + 
Sbjct: 1   MADTTVEKLATEVGKSVERLIEQFSQAGIKKGQADNVSEAEKQQLLDYLKKQHGG--DNA 58

Query: 61  PTRLTLQRKTRSTLSVNAGGGKSKNVQVEVRKKRTYVKRSSVEDEATREAEEAAMRAAEE 120
           PT++TLQRKT STLSV   GG+SK+V+VEVRK RT+VKR         +  +A ++A EE
Sbjct: 59  PTKMTLQRKTVSTLSVAGNGGQSKDVKVEVRKTRTFVKR---------DVSDAVLKAEEE 109

Query: 121 -QAKREAEEAAQRAAEEKAKREAEEAAKREAEAKRMAEEKAKRETQAATQPRSDEEKLKQ 179
            +AK EAE  A+   E KAK EAE  AK EAEAK  AE +AK + +AA + +  ++   +
Sbjct: 110 AKAKAEAEAKAKAETEAKAKAEAEAKAKVEAEAKAKAEAEAKAKAKAAAEVKVTKDTSPE 169

Query: 180 -EAARKEAEALKRRQEEEARRKAEEESRRQLEKVRELAEKNGERWSADKETVGDMQENTD 238
            EAAR EAE LK  QE   +RK  EE+ +  EK R LAE+N +RW+ ++    + +  +D
Sbjct: 170 AEAARIEAERLKAAQEAATKRKQAEEAAKAAEKARLLAEENSKRWAEEERQRLEAERYSD 229

Query: 239 YHVTTSRYAREAEDEADLHEEGARRRSTKANKRKMSSRDDNQERDSRPRGGKAGRKGRIN 298
           +H+TTS+ AR AED +D+ EE   RR+   N  K + R     RD R +      + R  
Sbjct: 230 HHITTSKVARAAEDSSDMDEEKRGRRARNKNTAK-TKRGGKDARDGREKH----MRNRST 284

Query: 299 KPMSMQHGFDKTAVVAKADVVVGETIVVSELAQKMSVKATEVIKVMMKMGAMATINQVID 358
            P SM HGF+K       DV +GET+ V+ELA  M+VKATE+IK MMKMG+M TINQV+D
Sbjct: 285 APESMAHGFNKPVAAVNRDVRIGETVTVAELAHLMAVKATEIIKQMMKMGSMVTINQVLD 344

Query: 359 QETAQLVAEEMGHKVVLRKENELEEAILSDRDDK--FEEVSRAPVVTIMGHVDHGKTSTL 416
           QETAQLVAEEMGHKVVL +ENELE+ +LS+RD++   +   RAPVVTIMGHVDHGKTS L
Sbjct: 345 QETAQLVAEEMGHKVVLIRENELEQQVLSERDEEGGVKLEPRAPVVTIMGHVDHGKTSLL 404

Query: 417 DYIRRTHVASGEAGGITQHIGAYHVETPNGMITFLDTPGHAAFTAMRARGAQATDIVVLV 476
           DYIRR  VA+GEAGGITQHIGAYHVET NGMITFLDTPGHAAFTAMRARGA+ATDIVVLV
Sbjct: 405 DYIRRAKVAAGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTAMRARGAKATDIVVLV 464

Query: 477 VAADDGVMPQTVEAIQHAKAAGVPLIVAVNKIDKDTANPDNVKTELSQYNVMPEEWGGDN 536
           VAADDGVMPQT+EAIQHAKA  VPLIVAVNK+DK  A+ D VK+ELSQ+ VM E+WGGDN
Sbjct: 465 VAADDGVMPQTIEAIQHAKAGNVPLIVAVNKMDKPEADIDRVKSELSQHGVMSEDWGGDN 524

Query: 537 MFVHISAKQGTNIDGLLEAILLQAEVLELKAVKQGMASGVVIESRLDKGRGPVATVLVQS 596
           MF  +SAK G  +D LLE ILLQAEVLELKAV+ GMA+GVVIES+LDKGRGPVAT+LVQ 
Sbjct: 525 MFAFVSAKTGAGVDDLLEGILLQAEVLELKAVRDGMAAGVVIESQLDKGRGPVATILVQE 584

Query: 597 GTLRKGDIVLCGQEYGRVRAMRDEVGNEVEEAGPSIPVEILGLSGVPAAGDEATVVRDER 656
           GTLR+GDIVLCG EYG++RAM+DE G  + EAGPSIPVEILGLSGVP+AGDEATVVRDER
Sbjct: 585 GTLRQGDIVLCGLEYGKIRAMKDENGRSITEAGPSIPVEILGLSGVPSAGDEATVVRDER 644

Query: 657 KAREVANYRAGKFREVKLARQQKSKLENMFSNMTAGDVAELNIVLKADVQGSVEAIADSL 716
           KAREVA YR GKFR+VKLARQQKSKLENMF+NMT G+V ELNIVLKADVQGS+EAI DSL
Sbjct: 645 KAREVALYRQGKFRDVKLARQQKSKLENMFANMTEGEVKELNIVLKADVQGSLEAITDSL 704

Query: 717 TKLSTDEVKVNIVGSGVGGITETDAVLAAASNAIVVGFNVRADASARRMIEAENIDLRYY 776
             LSTDEVKVNI+  GVG +TETDA LAAASNAI+VGFNVRADA AR+ IE E++DLRYY
Sbjct: 705 MGLSTDEVKVNIIARGVGALTETDATLAAASNAIMVGFNVRADAQARKTIENESVDLRYY 764

Query: 777 SIIYQLIDEVKQAMSGMLSPEFKQEIIGLAEVRDVFKSPKLGAIAGCMVTEGVIKRNAPI 836
           S+IY LIDEVK AM+GMLSPEFKQ+IIGLAEVRDVFKSPKLGAIAGCMVTEG IKR+API
Sbjct: 765 SVIYNLIDEVKAAMTGMLSPEFKQQIIGLAEVRDVFKSPKLGAIAGCMVTEGTIKRSAPI 824

Query: 837 RVLRDNVVIYEGELESLRRFKDDVAEVKNGYECGIGVKNYNDVRVGDQIEVFETIEIQRT 896
           RVLRDNVVI+EGELESLRRFKDDV EV+NG ECGIGVKNYNDVRVGDQIEVFET+E+ RT
Sbjct: 825 RVLRDNVVIFEGELESLRRFKDDVNEVRNGMECGIGVKNYNDVRVGDQIEVFETVEVART 884

Query: 897 I 897
           +
Sbjct: 885 L 885