Pairwise Alignments

Query, 495 a.a., transcription termination/antitermination protein NusA from Vibrio cholerae E7946 ATCC 55056

Subject, 503 a.a., Transcription termination protein NusA from Xanthomonas campestris pv. campestris strain 8004

 Score =  553 bits (1426), Expect = e-162
 Identities = 282/492 (57%), Positives = 372/492 (75%), Gaps = 6/492 (1%)

Query: 1   MSKEILAVVEAVSNEKAVPRERIFEALETALATSTKKKY-EIEIDVRVAIDRKTGAFETF 59
           MSKE+L VV+AV+NEK VPRE IF+A+E ALA++ KK+Y + ++  RV ID K G +ETF
Sbjct: 1   MSKELLLVVDAVANEKGVPREVIFDAIEAALASAAKKRYPDQDVLTRVTIDHKDGNYETF 60

Query: 60  RRWLVVEN---VEHPTKEISFEAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQVIVQ 116
           RRW VV +   +E P +++    A  + D V +GDY+E+QIE+  F RI  Q AKQVIVQ
Sbjct: 61  RRWEVVADDVVMESPDRQVRLMDAIEEADGVDVGDYVEEQIENPDFGRIAAQAAKQVIVQ 120

Query: 117 KVREAERAQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPG 176
           +VREAER Q+V+ + D  GEL+TGVVK+  R  + +DLG NAEA I ++  +PR+  RPG
Sbjct: 121 RVREAERQQVVDAWKDRVGELITGVVKRAERGNIFVDLGGNAEAFIPKDKGIPRDVLRPG 180

Query: 177 DRVRGLLYKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKI 236
           DRVRG L +V  E RG QLFI+R+ PE + ELF++EVPE+G+ L+E+KA ARDPG RAKI
Sbjct: 181 DRVRGYLAEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKI 240

Query: 237 AVKTNDKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASI 296
           AV  +D R DP+GAC+GMRG+RVQAVS EL GER+DIVLW++NPA FVINAMAPA+V SI
Sbjct: 241 AVIAHDTRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSI 300

Query: 297 IMDEDAHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASI 356
           I+DED HSMD+AV  D LAQAIG+ GQNVRLAS+LTGW+LNVMT   +  K + E  ++ 
Sbjct: 301 IVDEDKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTADQVAAKSEAEQASAR 360

Query: 357 ENFMKYLDIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTT 416
           + FM  L+++++ + +LV EGF+T+EEIAYVP+ ELL V+G DED+ +ELR+RA++AL  
Sbjct: 361 QLFMDRLEVDEEISAILVSEGFNTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALVN 420

Query: 417 IALAKEESFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLE--GIEGLT 474
            ALA+EE  EG +P EDLLAL G++ + AF LA  GV T EDL+D   D++   GIEG+T
Sbjct: 421 AALAEEEGLEGTQPTEDLLALEGMDEETAFALAEHGVRTSEDLSDLAADEIVDFGIEGMT 480

Query: 475 EQRAGELIMAAR 486
           ++RA  LI+AAR
Sbjct: 481 QERAAALILAAR 492