Pairwise Alignments

Query, 495 a.a., transcription termination/antitermination protein NusA from Vibrio cholerae E7946 ATCC 55056

Subject, 458 a.a., transcription termination factor NusA from Synechocystis sp000284455 PCC 6803

 Score =  196 bits (497), Expect = 2e-54
 Identities = 120/360 (33%), Positives = 200/360 (55%), Gaps = 29/360 (8%)

Query: 7   AVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEI-----------DVRVAIDRKTGA 55
           A++  +S    +P   + EAL  AL    ++    ++           +  V +D +   
Sbjct: 11  AMISEISKRNNLPTTAVEEALREALLKGYERFRRSQLMGHQFPEEYFNNFEVELDTEEEG 70

Query: 56  FETFRRWLVVENVEHPTKEISFEAASFDDDSVQLGDYIEDQI--ESVTFDRITTQTAKQV 113
           F       +VE VE+  ++IS +      +  QLGD +   +  E   F R+     KQV
Sbjct: 71  FRVLSTKRIVEEVENSDQQISLKEVLEVAEEAQLGDEVVLDVTPEQKDFGRMAAIQTKQV 130

Query: 114 IVQKVREAERAQIVEQFIDNEGELVTGVVKKVNRETVILDLGNN-----AEAVILREDQL 168
           ++QK+R+ +R  I E+F D EG ++     +  R+++I+ + ++      EA + + +QL
Sbjct: 131 LLQKLRDQQRKIIQEEFQDLEGTVLNARALRFERQSIIVAVQSSFGQPEVEAELPKREQL 190

Query: 169 PRENFRPGDRVRGLLYKVAPEA-RGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAA 227
           P +N+R     R  L +V   + RG QL ++R+   ++ +LF VEVPEI EE++ + A A
Sbjct: 191 PNDNYRANSTFRVYLKRVREGSQRGPQLVVSRAAAGLVVDLFSVEVPEIEEEVVRIVAVA 250

Query: 228 RDP-------GSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNP 280
           R+        G R KIAV T ++ +DPVGAC+G RG+R+ AV  EL GE+ID++ W  +P
Sbjct: 251 REAKPPSPSVGPRTKIAVDTLERDVDPVGACIGARGSRIHAVVNELRGEKIDVIRWSPDP 310

Query: 281 AQFVINAMAPA--DVASIIMDEDAHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNV 338
           A ++  A++PA  D   +I  E+ H++ I  E D L+ AIG+ GQNVRLA++LTGW++++
Sbjct: 311 ATYIAQALSPARVDQVYLIHAEERHALVIVAE-DQLSLAIGKEGQNVRLAARLTGWKIDI 369