Pairwise Alignments

Query, 495 a.a., transcription termination/antitermination protein NusA from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., transcription elongation factor NusA from Synechococcus elongatus PCC 7942

 Score =  193 bits (491), Expect = 9e-54
 Identities = 136/445 (30%), Positives = 226/445 (50%), Gaps = 48/445 (10%)

Query: 8   VVEAVSNEKAVPRERIFEALETALATSTKK-------------KYEIEIDVRVAIDRKTG 54
           ++ A+S +K +P   I EAL+ AL    ++              Y   IDV + ++++  
Sbjct: 12  LIYAISEQKKLPANVIEEALKEALLKGYERYRRTQQMGEQFEEDYFDNIDVELDVEQE-- 69

Query: 55  AFETFRRWLVVENVEHPTKEISFEAASFDDDSVQLGDYIEDQI--ESVTFDRITTQTAKQ 112
            F       +V  VE+P  +I+           Q G+ +   +  +   F R+     KQ
Sbjct: 70  GFRVLATKTIVNQVENPDHQIALADVQEVAPDAQAGEIVVLDVTPDKDDFGRMAAIQTKQ 129

Query: 113 VIVQKVREAERAQIVEQFIDNEGELVTGVVKKVNRETVILDLGNN-----AEAVILREDQ 167
           V+ QK+R+ +R  I E+F D E  ++   V +  R++VIL + +       EA + R +Q
Sbjct: 130 VLSQKLRDHQRKLIQEEFQDLEDPVLMAKVLRFERQSVILGVSSGLGRPEVEAELPRREQ 189

Query: 168 LPRENFRPGDRVRGLLYKVAP-EARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAA 226
           LP +N+R     R  L +V+    RG QL ++R+   ++  LF  EVPEI + ++ + A 
Sbjct: 190 LPNDNYRANATFRVFLKEVSEVPRRGPQLIVSRANAGLVVYLFENEVPEIQDGVVRIVAV 249

Query: 227 ARDP-------GSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDN 279
           AR+        G R KIAV T ++ +DPVGAC+G RG+R+Q V  EL GE+ID++ W  +
Sbjct: 250 AREANPPTRHVGPRTKIAVDTLEREVDPVGACIGARGSRIQVVVNELRGEKIDVIRWSPD 309

Query: 280 PAQFVINAMAPADVASI-IMDEDAHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNV 338
           PA ++ NA++PA V  + ++D +     + V  D L+ AIG+ GQNVRLA++LTGW++++
Sbjct: 310 PATYIANALSPARVQEVRLVDPEGRIAHVLVNDDQLSLAIGKEGQNVRLAARLTGWKIDI 369

Query: 339 MTVADLQKKHQEESMASIENFMKYLDIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGM 398
             VA        +++   +   + +   Q+ A +  EE      E A     EL + +  
Sbjct: 370 KDVA------LYDAVTEGQRISELIQERQERAAIAAEEEARAAAEAA-----ELAEWE-- 416

Query: 399 DEDLADELRSRAKEALTTIALAKEE 423
               A+E    A EA   +A A+ E
Sbjct: 417 ----AEEAALAAAEAAAELAAAEAE 437