Pairwise Alignments

Query, 495 a.a., transcription termination/antitermination protein NusA from Vibrio cholerae E7946 ATCC 55056

Subject, 542 a.a., transcription elongation factor NusA from Sinorhizobium meliloti 1021

 Score =  411 bits (1056), Expect = e-119
 Identities = 213/477 (44%), Positives = 314/477 (65%), Gaps = 4/477 (0%)

Query: 4   EILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRRWL 63
           E+L + +AV+ EK + RE +  A+  A+  + + +Y  E ++R  I+ KTG     R   
Sbjct: 9   ELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGSESNIRADINPKTGEIRLQRLLE 68

Query: 64  VVENVEHPTKEISFEAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQVIVQKVREAER 123
           VVE  E  + +I  E A   +   +LGD+I D +  + F RI  Q+AKQVIVQKVREAER
Sbjct: 69  VVEKAEDYSTQIPIELARDRNPDAKLGDFIADPLPPMDFGRIAAQSAKQVIVQKVREAER 128

Query: 124 AQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVRGLL 183
            +  ++F D  GE+V G VK+V    VI+DLG   E +I R++ +PREN R GDRVR  +
Sbjct: 129 DRQYDEFKDRVGEIVNGTVKRVEYGNVIVDLGRG-EGIIRRDEMIPRENMRYGDRVRAFV 187

Query: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAVKTNDK 243
           Y V  E RG Q+F++R+ P+ + +LF +EVPEI + +I++K+ ARDPGSRAKIAV +ND 
Sbjct: 188 YDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIQIKSVARDPGSRAKIAVVSNDS 247

Query: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDEDAH 303
            IDPVGACVGMRG+RVQAV GEL GE+IDI+ W  +PA F++NA+ PA+VA +++DEDA 
Sbjct: 248 SIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSPDPASFIVNALQPAEVAKVVLDEDAE 307

Query: 304 SMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMKYL 363
            +++ V  + L+ AIGR GQNVRLASQLTGW+++++T  +  ++ Q+E     + FM  L
Sbjct: 308 RIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQKEFNERTQLFMDAL 367

Query: 364 DIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTTIALAKEE 423
           D+++   ++L  EGF+ +EE+AYV ++E+  ++G DED A+EL++RA+E L  I    + 
Sbjct: 368 DVDEMVGQVLASEGFAQVEELAYVELDEISSIEGFDEDTANELQTRAREYLEKIEAEMDA 427

Query: 424 SFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIEGLTEQRAGE 480
             + L  +++L  + GL   M   L  +G+ T+ED A    DDL    G TE++ GE
Sbjct: 428 KRKELGVSDELRTIDGLTSQMLVALGEEGIKTIEDFAGCAADDL---VGWTERKDGE 481



 Score = 34.7 bits (78), Expect = 9e-06
 Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 368 DFAELLVEEGFSTLEEIAYVPMNEL---LDVDGMDEDLADELRSRAKEALTTIALAKEES 424
           + A+++++E    +E +  VP  +L   +   G +  LA +L     + LT    ++   
Sbjct: 296 EVAKVVLDEDAERIEVV--VPDEQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQ 353

Query: 425 FEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIEGLTEQRAGELIMA 484
            E  E  +  +    ++  +   LA++G A +E+LA   +D++  IEG  E  A EL   
Sbjct: 354 KEFNERTQLFMDALDVDEMVGQVLASEGFAQVEELAYVELDEISSIEGFDEDTANELQTR 413

Query: 485 AR 486
           AR
Sbjct: 414 AR 415