Pairwise Alignments

Query, 495 a.a., transcription termination/antitermination protein NusA from Vibrio cholerae E7946 ATCC 55056

Subject, 516 a.a., NusA antitermination factor (NCBI) from Rhodospirillum rubrum S1H

 Score =  425 bits (1092), Expect = e-123
 Identities = 223/491 (45%), Positives = 331/491 (67%), Gaps = 3/491 (0%)

Query: 4   EILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRRWL 63
           E++ V + V+ +K++ RE +F A+E A+  + + KY  E D+R  IDRKTG     R   
Sbjct: 11  ELVQVADTVARDKSIEREEVFAAMEQAIQKAGRSKYGHEHDIRARIDRKTGEIRLARYIE 70

Query: 64  VVENVEHPTKEISFEAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQVIVQKVREAER 123
           VVE VE+   +I+   A      ++LG+++ D +  + F RI  QTAKQVIVQKVR+AER
Sbjct: 71  VVEEVENEFTQITLAGAKRKKADIELGEFLVDPLPPIDFGRIAAQTAKQVIVQKVRDAER 130

Query: 124 AQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVRGLL 183
            +   ++ D  GE++ G+VK+V    VI+D+G  AEA++ R++ +PRE+F+ GDR+R  +
Sbjct: 131 ERQFAEYKDRLGEIINGLVKRVEFGNVIVDMGR-AEALLRRDEVIPREHFKNGDRIRAYI 189

Query: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAVKTNDK 243
             V  E RG Q+F++R+  + +A+LF  EVPEI + +IE+K+ ARDPGSRAKIAV +ND 
Sbjct: 190 MDVRQEPRGPQIFLSRTHEQFMAKLFAQEVPEIYDGIIEIKSVARDPGSRAKIAVLSNDH 249

Query: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDEDAH 303
            IDPVGACVGMRG+RVQAV  EL GE+IDI+ W  +PA FV+NA+APA+VA +++DE+A+
Sbjct: 250 AIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWATDPATFVVNALAPAEVAKVVLDEEAN 309

Query: 304 SMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMKYL 363
            +++ V  + L+ AIGR GQNVRLAS+LTGW+++++T A+  ++ Q+E     + F++ L
Sbjct: 310 RIEVVVPDEQLSLAIGRRGQNVRLASKLTGWDIDILTEAEESERRQDEFRIRTQAFIEAL 369

Query: 364 DIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTTIALAKEE 423
           D++   A LLV EGF+T+E++A+V + EL +++G DED+A EL++RA+  L       EE
Sbjct: 370 DVDDVIAHLLVTEGFTTVEDVAFVAIAELSEIEGFDEDVASELQNRAQVFLAERERLNEE 429

Query: 424 SFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDL-EGIEGLTEQRAGELI 482
             + L   +++  + GL   M   L  KGV TL+DL D   D+L E + GL E  A  +I
Sbjct: 430 RRKELGVVDEMAEIEGLTAAMLVALGEKGVKTLDDLGDLASDELIEIVGGLNEDDANAVI 489

Query: 483 MAARNICWFGE 493
           MAAR   WFGE
Sbjct: 490 MAAR-AHWFGE 499