Pairwise Alignments

Query, 495 a.a., transcription termination/antitermination protein NusA from Vibrio cholerae E7946 ATCC 55056

Subject, 502 a.a., transcription termination/antitermination protein NusA from Rahnella sp. WP5

 Score =  758 bits (1957), Expect = 0.0
 Identities = 386/502 (76%), Positives = 443/502 (88%), Gaps = 7/502 (1%)

Query: 1   MSKEILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFR 60
           M+KEILAVVEAVSNEK++PRE+IFEALE AL+T+TKKKYE EI+VRV+IDRKTG F+TFR
Sbjct: 1   MNKEILAVVEAVSNEKSLPREKIFEALEIALSTATKKKYEQEIEVRVSIDRKTGDFDTFR 60

Query: 61  RWLVVENVEHPTKEISFEAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQVIVQKVRE 120
           RW+ V  V  PT+EI+ EAA ++D S+ LG YIEDQIESVTFDRITTQTAKQVIVQKVRE
Sbjct: 61  RWVAVNEVTQPTREITLEAAQYEDPSIDLGGYIEDQIESVTFDRITTQTAKQVIVQKVRE 120

Query: 121 AERAQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVR 180
           AERA +V+QF + +GE+VTGVVKKVNR+++ LDLG+NAEAVILRED LPRENFR GDR+R
Sbjct: 121 AERAMVVDQFREQQGEIVTGVVKKVNRDSIALDLGSNAEAVILREDMLPRENFRSGDRIR 180

Query: 181 GLLYKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAVKT 240
           G+LY V PEARG QLF++RS+ EML ELFR+EVPEIGEELIE+KAAARDPGSRAKIAVKT
Sbjct: 181 GVLYDVRPEARGAQLFVSRSRNEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKT 240

Query: 241 NDKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDE 300
           NDKRIDPVGACVGMRGARVQAVS ELGGERIDI+LWDDNPAQFVINAMAPADVASI++DE
Sbjct: 241 NDKRIDPVGACVGMRGARVQAVSSELGGERIDIILWDDNPAQFVINAMAPADVASIVVDE 300

Query: 301 DAHSMDIAVEADNLAQAIGRNGQNVRLASQL-------TGWELNVMTVADLQKKHQEESM 353
           D  +MDIAVEA NLAQAIGRNGQNVRLASQL         WELNVMT  DLQ KHQ E+ 
Sbjct: 301 DKCTMDIAVEASNLAQAIGRNGQNVRLASQLLKQHRGDDKWELNVMTADDLQAKHQAEAH 360

Query: 354 ASIENFMKYLDIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEA 413
           A+I+ F KYL I++DFA +LVEEGFSTLEE+AYVP+NELL++DG+DED  D LR RAKEA
Sbjct: 361 AAIDTFTKYLAIDEDFATVLVEEGFSTLEELAYVPVNELLEIDGLDEDTVDALRERAKEA 420

Query: 414 LTTIALAKEESFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIEGL 473
           LTT+ALA+EES    +PA+DLL LAGLER MAFKLAA+GV TLEDLA+QGVDDL  IEGL
Sbjct: 421 LTTLALAQEESLGDKKPADDLLNLAGLERSMAFKLAAQGVCTLEDLAEQGVDDLADIEGL 480

Query: 474 TEQRAGELIMAARNICWFGEDA 495
           T+++AGELIMAARNICWFG++A
Sbjct: 481 TDEQAGELIMAARNICWFGDNA 502