Pairwise Alignments

Query, 495 a.a., transcription termination/antitermination protein NusA from Vibrio cholerae E7946 ATCC 55056

Subject, 537 a.a., transcription termination factor NusA from Rhodopseudomonas palustris CGA009

 Score =  392 bits (1007), Expect = e-113
 Identities = 214/478 (44%), Positives = 306/478 (64%), Gaps = 6/478 (1%)

Query: 4   EILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRRWL 63
           E+L + +AV+ EK + R  +  A+E A+A + + +Y  E DV   ID K G     R  L
Sbjct: 9   ELLQIADAVAREKTIDRSIVIAAMEDAIAKAARARYGSETDVHAEIDPKKGELRLSRHML 68

Query: 64  VVENVEHPTKEISFEAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQVIVQKVREAER 123
           VVE VE+P  +IS + A   +   Q+GD I D +  + + RI  Q+AKQVIVQKVREAER
Sbjct: 69  VVEQVENPANQISLKDAQRANPGAQIGDTIADTLPPLEYGRIAAQSAKQVIVQKVREAER 128

Query: 124 AQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVRGLL 183
            +   +F D  G++V GVVK+V   +VI+DLG   EA+I R++ LPRE+FR GDRVR  +
Sbjct: 129 DRQYMEFKDRIGDIVNGVVKRVEYGSVIVDLGRG-EAIIRRDEMLPRESFRNGDRVRAYV 187

Query: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAVKTNDK 243
           + V  E RG Q+F++R+ P+ +A+LF  EVPEI + ++E+KA ARDPGSRAKI V + D 
Sbjct: 188 FDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGVVSRDS 247

Query: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDEDAH 303
            +DPVGACVGMRG+RVQAV  EL GE+IDI+ W  + A FV+NA+APA+V+ +++DED  
Sbjct: 248 SVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVSKVVIDEDRE 307

Query: 304 SMDIAVEADN--LAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMK 361
            +++ V   N  L+ AIGR GQNVRLASQLTGW+++++T ++  ++ Q +   +   FM 
Sbjct: 308 RIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTESEESERRQADFEKTTRAFMD 367

Query: 362 YLDIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTTIALAK 421
            L++++   +LL  EGF+++EE+A V   EL  ++G DE+ A EL++RA E L  I    
Sbjct: 368 ALNVDEVVGQLLASEGFTSVEELALVDPRELASIEGFDEETAAELQTRASEYLDRIESEL 427

Query: 422 EESFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIEGLTEQRAG 479
           E     L   + L  + G+   M  K     V T+EDLA    DDL    G TE++ G
Sbjct: 428 EARRLELGVEDALKDVPGVTSKMLVKFGENDVKTVEDLAGCATDDL---VGWTERKDG 482