Pairwise Alignments

Query, 495 a.a., transcription termination/antitermination protein NusA from Vibrio cholerae E7946 ATCC 55056

Subject, 424 a.a., transcription termination factor NusA from Parabacteroides merdae CL09T00C40

 Score =  184 bits (468), Expect = 4e-51
 Identities = 107/393 (27%), Positives = 211/393 (53%), Gaps = 8/393 (2%)

Query: 16  KAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRRWLVV--ENVEHPTK 73
           K + ++ +   LE +      K +  + +  V I+ + G FE +R   VV  + +E    
Sbjct: 21  KNIDKDTMISVLEDSFRNVIAKMFGTDENYDVIINPEKGDFEIWRNRTVVADDELEDENL 80

Query: 74  EISFEAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQVIVQKVREAERAQIVEQFIDN 133
           +++   A   D   ++G+ + D++    F R      +Q +  K+ E ++  +  ++ D 
Sbjct: 81  QLTLTEARKIDADCEVGEEVTDEVHFADFGRRAILNLRQTLASKILELQKDSLFAKYKDK 140

Query: 134 EGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVRGLLYKVAPEARGF 193
            G ++   V +V ++ ++L      E ++ + +Q+P + +R G+ VR ++ +V       
Sbjct: 141 IGNIIAADVYQVWKKEILLLDDEGNELLLPKTEQIPTDFYRKGETVRAIVQRVDNYNNNP 200

Query: 194 QLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAVKTNDKRIDPVGACVG 253
           ++ ++R+    L  LF +EVPEI + LI +KA AR PG RAK+AV++ D RIDPVGACVG
Sbjct: 201 KIILSRTDKLFLQRLFELEVPEINDGLITIKAIARIPGERAKVAVESYDDRIDPVGACVG 260

Query: 254 MRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDEDAHSMDIAVEADN 313
           M+G+R+  +  EL  E ID++ +  N + F+  A++PA ++SI ++E+ H  ++ +  + 
Sbjct: 261 MKGSRIHGIVRELRNENIDVINYTSNISLFIQRALSPAKISSIRVNEEEHKAEVYLRPEE 320

Query: 314 LAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMKYLDIEQDFAELL 373
           ++ AIG+ G N++LA  LT + ++V    D++   +E+    ++ F    +I+    E L
Sbjct: 321 VSLAIGKGGLNIKLACMLTEYAIDVF--RDVEGADEED--IYLDEFSD--EIDSWVIEAL 374

Query: 374 VEEGFSTLEEIAYVPMNELLDVDGMDEDLADEL 406
              G  T + +  +   E+++   ++E   DE+
Sbjct: 375 KNIGCYTAKSVLAMNREEIVERADLEEQTVDEV 407