Pairwise Alignments

Query, 495 a.a., transcription termination/antitermination protein NusA from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., transcription elongation protein NusA from Phaeobacter inhibens DSM 17395

 Score =  383 bits (984), Expect = e-111
 Identities = 208/459 (45%), Positives = 306/459 (66%), Gaps = 3/459 (0%)

Query: 4   EILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRRWL 63
           E+L   EAV+ EK +    + +A+E +LA + K +Y  E+D+RV+IDRKTG     R   
Sbjct: 10  ELLQTAEAVAREKMIDPGLVVDAMEESLARAAKSRYGSEMDIRVSIDRKTGRATFTRVRT 69

Query: 64  VVEN--VEHPTKEISFEAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQVIVQKVREA 121
           VVE+  +E+   E++ E A        +GD   +++  V   RI  Q+AKQVI+QKVREA
Sbjct: 70  VVEDDALENYQAELTVEQAKQYMADPSVGDVFVEEVPPVEMGRIAAQSAKQVILQKVREA 129

Query: 122 ERAQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVRG 181
           ER +  E+F D  G ++ G+VK+     VI+D+G   EA++ R +++ RE++RP DR+R 
Sbjct: 130 ERDRQYEEFKDRAGTIINGLVKREEYGNVIVDVGAG-EAILRRNEKIGRESYRPNDRIRC 188

Query: 182 LLYKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAVKTN 241
            +  V  E RG Q+F++R+ PE +AELF++EVPEI + +IE+KA ARDPGSRAKIAV + 
Sbjct: 189 FIKDVRREPRGPQIFLSRTAPEFMAELFKMEVPEIYDGVIEIKAVARDPGSRAKIAVISY 248

Query: 242 DKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDED 301
           D  IDPVGACVGMRG+RVQAV  EL GE+IDI+ W+++   F++NA+ PA+V+ +++DE+
Sbjct: 249 DGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSKVVLDEE 308

Query: 302 AHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMK 361
           A  +++ V  + L+ AIGR GQNVRLASQLT  ++++MT  +   + Q+E  A  + FM+
Sbjct: 309 AGKIEVVVPEEQLSLAIGRRGQNVRLASQLTALDIDIMTEEEESARRQKEFEARTKLFME 368

Query: 362 YLDIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTTIALAK 421
            LD+++ FA+LLV EGF+ LEE+AYV ++ELL +DG+DE  A EL++RA + L   A A 
Sbjct: 369 TLDLDEFFAQLLVSEGFTNLEEVAYVELDELLVIDGVDEGTAQELQARAADYLEAQAKAA 428

Query: 422 EESFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLA 460
            ++   L   + L+   GL   M   LA  G+ TLED A
Sbjct: 429 IDAARALGVEDSLIDFDGLTPQMVEALAKDGIKTLEDFA 467