Pairwise Alignments

Query, 495 a.a., transcription termination/antitermination protein NusA from Vibrio cholerae E7946 ATCC 55056

Subject, 414 a.a., transcription termination/antitermination protein NusA from Pedobacter sp. GW460-11-11-14-LB5

 Score =  213 bits (543), Expect = 8e-60
 Identities = 128/394 (32%), Positives = 220/394 (55%), Gaps = 10/394 (2%)

Query: 16  KAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRRWLVVEN--VEHPTK 73
           K + R  +   LE    +  +KKY  + +  V ++   G  E +R   V+E+   E    
Sbjct: 19  KNIDRPTVISVLEEVFRSMLRKKYGTDENCDVIVNPDNGDLEIWRTRKVMEDGFSEDDDL 78

Query: 74  EISFEAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQVIVQKVREAERAQIVEQFIDN 133
           EI     S  D ++++GD   +QI   +F R     A+Q +V KV E E+ +I +++ D 
Sbjct: 79  EIELAEVSKLDSTLEVGDDYIEQITLESFGRRAILAARQTLVSKVLELEKDEIFKKYKDR 138

Query: 134 EGELVTGVVKKV-NRETVILDLGNNAEAVILREDQLPRENFRPGDRVRGLLYKVAPEARG 192
            GE+VTG V +V  +ET++LD   N E ++ + +Q+P + F+ GD VR ++ KV      
Sbjct: 139 VGEIVTGEVYQVWKKETLVLDDEGN-ELLMPKTEQIPADYFKKGDSVRAVISKVEMINAN 197

Query: 193 FQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAVKTNDKRIDPVGACV 252
            ++ I+R+ PE L  LF  EVPEI + LI +K   R+PG RAK+AV++ D RIDPVGACV
Sbjct: 198 PKIIISRTAPEFLQRLFEQEVPEIFDGLITVKKIVREPGERAKVAVESYDDRIDPVGACV 257

Query: 253 GMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDEDAHSMDIAVEAD 312
           GM+G+R+  +  EL  E ID++ + +N + ++  A++PA + SI +D++     + ++ D
Sbjct: 258 GMKGSRIHGIVRELKNENIDVINFTNNISLYITRALSPAKITSIKLDDETKHASVYLKPD 317

Query: 313 NLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMKYLDIEQDFAEL 372
            ++ AIGR G N++LA +LTG+E++V   A      + +    +E F    +I+    + 
Sbjct: 318 QVSLAIGRGGHNIKLAGKLTGYEIDVYREAG----EESDEDVDLEEFSD--EIDSWIIDE 371

Query: 373 LVEEGFSTLEEIAYVPMNELLDVDGMDEDLADEL 406
           L   G  T + +  + + +L+    ++E+   E+
Sbjct: 372 LKAIGCDTAKSVLALTVEDLVKRTDLEEETIKEV 405