Pairwise Alignments

Query, 495 a.a., transcription termination/antitermination protein NusA from Vibrio cholerae E7946 ATCC 55056

Subject, 499 a.a., transcription elongation factor NusA (RefSeq) from Shewanella loihica PV-4

 Score =  734 bits (1895), Expect = 0.0
 Identities = 365/499 (73%), Positives = 441/499 (88%), Gaps = 4/499 (0%)

Query: 1   MSKEILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFR 60
           M+KEIL V EAVSNEKAVPRE+IFEALE ALAT+TKKKYE +I+VRVAIDRKTG +ETFR
Sbjct: 1   MNKEILLVAEAVSNEKAVPREKIFEALEIALATATKKKYEGDIEVRVAIDRKTGEYETFR 60

Query: 61  RWLVVEN----VEHPTKEISFEAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQVIVQ 116
           RW+VVE+    +E+P +EI+ EAA +++  +Q+G+YIED+IESV FDRITTQTAKQVIVQ
Sbjct: 61  RWMVVEDEGQALENPFREITLEAARYENPEIQVGEYIEDEIESVVFDRITTQTAKQVIVQ 120

Query: 117 KVREAERAQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPG 176
           KVREAERAQIV+QF++ EGEL+TGVVKK NRE+V++DLGNNA+AV+ +ED + RE+FRPG
Sbjct: 121 KVREAERAQIVDQFLEKEGELITGVVKKSNRESVVVDLGNNADAVLFKEDLISRESFRPG 180

Query: 177 DRVRGLLYKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKI 236
           DRVR LLY V PEARG QLF+TR+KP+ML ELFRVEVPEI +E+IE+  AARDPGSRAKI
Sbjct: 181 DRVRALLYAVRPEARGAQLFLTRTKPDMLIELFRVEVPEIADEMIEIMGAARDPGSRAKI 240

Query: 237 AVKTNDKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASI 296
           AVK+ND+RIDP+GACVGMRGARVQAVS ELGGER+DIVLWDDNPAQFVINAMAPADVASI
Sbjct: 241 AVKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQFVINAMAPADVASI 300

Query: 297 IMDEDAHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASI 356
           I+DED HSMDIAVEAD+LAQAIGRNGQNVRLA+QL+GWELNVMTV D+Q KHQ ES   +
Sbjct: 301 IVDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQLSGWELNVMTVEDMQAKHQAESAKIV 360

Query: 357 ENFMKYLDIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTT 416
             F+  LD+++DFA++L +EGF++LEE+AYVP +ELL++DG DE++ + LR RAK A++T
Sbjct: 361 NLFVSALDVDEDFAQVLADEGFTSLEEVAYVPESELLEIDGFDEEIVEALRERAKAAIST 420

Query: 417 IALAKEESFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIEGLTEQ 476
            ALA EE+ +G EP+EDLLAL GLER +A+ LA+KGV TLEDLA+QG+DDL  IE LTE+
Sbjct: 421 RALASEEALDGAEPSEDLLALEGLERHLAYVLASKGVITLEDLAEQGIDDLIEIEELTEE 480

Query: 477 RAGELIMAARNICWFGEDA 495
           +AGELIMAARNICWFGE+A
Sbjct: 481 KAGELIMAARNICWFGEEA 499