Pairwise Alignments

Query, 495 a.a., transcription termination/antitermination protein NusA from Vibrio cholerae E7946 ATCC 55056

Subject, 490 a.a., transcription termination factor NusA from Dechlorosoma suillum PS

 Score =  490 bits (1262), Expect = e-143
 Identities = 249/493 (50%), Positives = 358/493 (72%), Gaps = 6/493 (1%)

Query: 1   MSKEILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFR 60
           MS+EIL +V+A++ EK V ++ +F ALE+ALA++TKK+   E DVRV IDR TG +E+FR
Sbjct: 1   MSREILLLVDALAREKNVAKDVVFGALESALASATKKRINDEADVRVVIDRNTGEYESFR 60

Query: 61  RWLVVENVEHPTK--EISFEAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQVIVQKV 118
           RW VV +  +  +  E+    A   D+ V++GD IE+ +E + F RI  Q AKQVI+Q++
Sbjct: 61  RWQVVADETYVNEFLEMPLSEAQKQDEGVEVGDVIEESLEPIDFGRIGAQAAKQVILQRI 120

Query: 119 REAERAQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDR 178
           R+AER QI+  F++ +  +V+G +K++ R   I++ G   EA++ R+  +P+EN R GDR
Sbjct: 121 RDAEREQILADFLERKEHIVSGTIKRMERGNAIIEAGK-IEALLPRDQMIPKENLRVGDR 179

Query: 179 VRGLLYKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAV 238
           V+  L ++   ARG Q+ ++R+ PE + +LF +EVPEI + L+E+KAAARDPG RAKIAV
Sbjct: 180 VKAFLLRIDRNARGPQIILSRTAPEFIIKLFDLEVPEIEDGLMEIKAAARDPGMRAKIAV 239

Query: 239 KTNDKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIM 298
           K+ND R+DP+G CVGMRG RV AV+ EL GER+DIV W  +PAQFVI A+APA+V+SI++
Sbjct: 240 KSNDPRVDPIGTCVGMRGTRVTAVTNELAGERVDIVHWSQDPAQFVIGALAPAEVSSIVV 299

Query: 299 DEDAHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIEN 358
           DE+ HSMD+ V+  NLA AIGR GQNVRLAS+LTGW +N+MT  + +KK + E+ A+   
Sbjct: 300 DEEKHSMDVVVDEANLAIAIGRGGQNVRLASELTGWNINLMTQEESEKKVEAETAATRVL 359

Query: 359 FMKYLDIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTTIA 418
           FM+ LD++++ A +L++EGFSTLEE+AYVP+ E+L+++  DED  +ELR+RA+  L T A
Sbjct: 360 FMEKLDVDEEVANILIDEGFSTLEEVAYVPLAEMLEIEAFDEDTVNELRNRARNVLLTEA 419

Query: 419 LAKEESFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIEGLTEQRA 478
           +  EE  EG+E  + LLAL G+++ +A KLA+ GV TL+DLAD  VD+L  I G+   RA
Sbjct: 420 IVTEEQLEGVE--DSLLALDGMDKSLAAKLASGGVKTLDDLADLAVDELTEITGIDADRA 477

Query: 479 GELIMAARNICWF 491
            +LI  AR+  WF
Sbjct: 478 KQLITNARS-HWF 489