Pairwise Alignments

Query, 495 a.a., transcription termination/antitermination protein NusA from Vibrio cholerae E7946 ATCC 55056

Subject, 443 a.a., transcription elongation factor NusA (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  291 bits (744), Expect = 4e-83
 Identities = 149/408 (36%), Positives = 256/408 (62%), Gaps = 6/408 (1%)

Query: 1   MSKEILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFR 60
           MS E+   ++ +S +K + R+ + + LE A+ TS  +K+  E+D  V+ + +TG  + ++
Sbjct: 1   MSLELKKAIDQISKDKGLDRDMLIDTLEEAVRTSVARKFGDEMDAEVSYNDETGEIDVYQ 60

Query: 61  RWLVVENVEHPTKEISFEAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQVIVQKVRE 120
             +VV+ VE+P  EIS E A   D SVQL D +  +++     RI  Q+AKQVI+Q++R+
Sbjct: 61  FKIVVKKVENPNSEISLEDARTHDPSVQLDDEMGFRVKIEDLGRIAAQSAKQVIIQRMRD 120

Query: 121 AERAQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVR 180
           AE+  I E++ D  GE+V+G++++ ++   I++LG   EA++ +E+Q+PRE+++ GDRV+
Sbjct: 121 AEQEIIYEEYKDRRGEIVSGIIQRRDKAGWIINLGRT-EALLPKEEQIPREHYKRGDRVQ 179

Query: 181 GLLYKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAVKT 240
            +L  V  E RG Q+ ++R+  + +A LFR EVPE+ +  +++   +RDPGSRAK AV +
Sbjct: 180 AILIDVRKEGRGPQVIVSRAHRDYMAALFRREVPEVDDGTVQIMGVSRDPGSRAKAAVMS 239

Query: 241 NDKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDE 300
            D+ +DPVGACVG+RG+R+Q +  E+ GERIDIV+W  + A +  NA++PA ++ I++DE
Sbjct: 240 RDRDVDPVGACVGIRGSRIQNIVQEMRGERIDIVVWSPDIATYARNALSPAVISRIVVDE 299

Query: 301 DAHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFM 360
           + + +++ V  D L  AIGR GQNV+LA++L GW++++ T     +    E+ A      
Sbjct: 300 EENLLEVIVPDDQLTNAIGRKGQNVKLAAKLLGWKIDIYT-----ETRYNEANAIGRGLE 354

Query: 361 KYLDIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRS 408
           +   + +   E  +  GF ++E +      EL    G+      +LR+
Sbjct: 355 QIASVAEISIEQFIAAGFQSIERLREADDEELASALGLAPGKIADLRA 402