Pairwise Alignments

Query, 495 a.a., transcription termination/antitermination protein NusA from Vibrio cholerae E7946 ATCC 55056

Subject, 497 a.a., transcription elongation factor NusA from Marinobacter adhaerens HP15

 Score =  596 bits (1536), Expect = e-175
 Identities = 307/498 (61%), Positives = 389/498 (78%), Gaps = 4/498 (0%)

Query: 1   MSKEILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIE-IDVRVAIDRKTGAFETF 59
           MSKEIL VVE+VSNEK V ++ IFEA+E ALAT+ KK++E E  D+RV+IDRKTG +ETF
Sbjct: 1   MSKEILLVVESVSNEKGVEKDVIFEAIELALATAAKKRFEDEEADIRVSIDRKTGEYETF 60

Query: 60  RRWLVVENVEHPT--KEISFEAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQVIVQK 117
           RRWLVV+N   P    E++ + A   D +++ GD  E++IES  F RI  Q AKQ+I QK
Sbjct: 61  RRWLVVDNDAVPALGTELTLQEAEEIDPALKPGDIHEEKIESEAFGRIGAQAAKQIIFQK 120

Query: 118 VREAERAQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGD 177
           VREAER +IV+ + D  GELV+G VKKV R+ VI+DLG NAEA++ RE  +PRE FR GD
Sbjct: 121 VREAERTKIVDSYRDRVGELVSGTVKKVTRDNVIVDLGANAEALLPREFLIPRETFRMGD 180

Query: 178 RVRGLLYKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIA 237
           RVR LL ++  + RG QL ++R+ P+ML ELFR+EVPEI E+LIE++ AARDPGSRAKIA
Sbjct: 181 RVRSLLLEIRTDHRGPQLILSRTSPQMLIELFRIEVPEIAEDLIEIRGAARDPGSRAKIA 240

Query: 238 VKTNDKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASII 297
           VKTND+RIDPVGACVGMRG+RVQAVS ELGGER+DIVLWDDNPAQ VINAMAPA+VASI+
Sbjct: 241 VKTNDRRIDPVGACVGMRGSRVQAVSNELGGERVDIVLWDDNPAQLVINAMAPAEVASIV 300

Query: 298 MDEDAHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIE 357
           MDED H+M++AV  DNLAQAIGRNGQNVRLA+ LTGW LNVMT  +  ++ ++E    +E
Sbjct: 301 MDEDRHTMEVAVAEDNLAQAIGRNGQNVRLATDLTGWTLNVMTEEEAGERQEQEYSRLVE 360

Query: 358 NFMKYLDIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTTI 417
           +F   LD++++FA +L+EEGF+++EE+AYVPM E+L ++G DE+   ELR RAK+ L   
Sbjct: 361 HFTGNLDVDEEFAGVLIEEGFTSIEEVAYVPMEEMLAIEGFDEETVTELRRRAKDVLLNQ 420

Query: 418 ALAKEESFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIEGLTEQR 477
           ALA EE+ EG EPAEDLL + G++R +AFKLA  GV T+EDLA+Q V DL  IEG+ E+R
Sbjct: 421 ALASEEALEGAEPAEDLLGMDGMDRSLAFKLAGMGVRTMEDLAEQSVGDLLEIEGMDEER 480

Query: 478 AGELIMAARNICWFGEDA 495
           AG+LIM AR   WF + A
Sbjct: 481 AGQLIMTAR-APWFEDQA 497