Pairwise Alignments

Query, 495 a.a., transcription termination/antitermination protein NusA from Vibrio cholerae E7946 ATCC 55056

Subject, 495 a.a., transcription termination/antitermination protein NusA from Pantoea sp. MT58

 Score =  774 bits (1998), Expect = 0.0
 Identities = 387/495 (78%), Positives = 449/495 (90%)

Query: 1   MSKEILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFR 60
           M+KEILAVVEAVSNEKA+PRE+IFEALE+ALAT+TKKKYE EI+VRV+IDR++G F+TFR
Sbjct: 1   MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIEVRVSIDRRSGDFDTFR 60

Query: 61  RWLVVENVEHPTKEISFEAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQVIVQKVRE 120
           RW +VE V  PT+EI+ +AA F+D++  LG+Y+EDQIESVTFDRITTQTAKQVIVQKVRE
Sbjct: 61  RWEIVEEVTQPTREITLDAARFEDEAFNLGEYVEDQIESVTFDRITTQTAKQVIVQKVRE 120

Query: 121 AERAQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVR 180
           AERA +V+QF + EGE++TGVVKKVNR+ + LDLG+NAEAVILRED LPRENFRPGDR+R
Sbjct: 121 AERAMVVDQFREQEGEIITGVVKKVNRDNISLDLGSNAEAVILREDMLPRENFRPGDRIR 180

Query: 181 GLLYKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAVKT 240
           G+LY V PEARG QLF+TRSKPEML ELFR+EVPEIGEELIE+KAAARDPGSRAKIAVKT
Sbjct: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKT 240

Query: 241 NDKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDE 300
           NDKRIDPVGACVGMRGARVQAVS ELGGERIDIVLWDDNPAQFVINAMAPADVASI++DE
Sbjct: 241 NDKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300

Query: 301 DAHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFM 360
           D H+MDIAVEA NLAQAIGRNGQNVRLASQL+GWELNVMTV DLQ KHQ E+ A+I+ F 
Sbjct: 301 DNHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDMFT 360

Query: 361 KYLDIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTTIALA 420
           K+LDI+++FA +LVEEGFS+LEE+AYVP+NELL+VDG+DE+  + LR RAK ALTT+ALA
Sbjct: 361 KHLDIDEEFATVLVEEGFSSLEELAYVPINELLEVDGLDEETIEALRERAKNALTTLALA 420

Query: 421 KEESFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIEGLTEQRAGE 480
           KEES    EPAEDLL L GL+R +AF+LA+KGV TLEDLA+QGVDDL  IEGL++++AG 
Sbjct: 421 KEESLGNQEPAEDLLNLEGLDRALAFRLASKGVCTLEDLAEQGVDDLTDIEGLSDEQAGA 480

Query: 481 LIMAARNICWFGEDA 495
           LIMAARNICWFG+DA
Sbjct: 481 LIMAARNICWFGDDA 495