Pairwise Alignments

Query, 495 a.a., transcription termination/antitermination protein NusA from Vibrio cholerae E7946 ATCC 55056

Subject, 499 a.a., N utilization substance protein A (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  738 bits (1905), Expect = 0.0
 Identities = 368/499 (73%), Positives = 440/499 (88%), Gaps = 4/499 (0%)

Query: 1   MSKEILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFR 60
           M+KEIL V EAVSNEKAVPRE+IFEALETALAT+TKKKYE +IDVRVAIDRKTGA+ETFR
Sbjct: 1   MNKEILLVAEAVSNEKAVPREKIFEALETALATATKKKYEGDIDVRVAIDRKTGAYETFR 60

Query: 61  RWLVVEN----VEHPTKEISFEAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQVIVQ 116
           RW+V+++    +E+P +EI+ EAA F++  +Q G+YIEDQIESV FDRITTQTAKQVIVQ
Sbjct: 61  RWMVIDDNGVALENPYREITLEAARFEEPEIQPGEYIEDQIESVAFDRITTQTAKQVIVQ 120

Query: 117 KVREAERAQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPG 176
           KVREAERAQ+VEQF D EGEL+TGVVKK  RE+V++DLGNNA+ V+ RED + RE+FRPG
Sbjct: 121 KVREAERAQVVEQFQDKEGELITGVVKKATRESVVVDLGNNADGVLFREDLISRESFRPG 180

Query: 177 DRVRGLLYKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKI 236
           DRVR LLY V PEARG QLF+TR+KP+ML ELFRVEVPEI +ELIE+  AARDPG+RAKI
Sbjct: 181 DRVRALLYSVRPEARGAQLFLTRTKPDMLIELFRVEVPEIADELIEVMGAARDPGARAKI 240

Query: 237 AVKTNDKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASI 296
           AVK+ND+RIDP+GACVGMRGARVQAVS ELGGER+DIVLWDDNPAQ+VINAMAPADVASI
Sbjct: 241 AVKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQYVINAMAPADVASI 300

Query: 297 IMDEDAHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASI 356
           I+DED HSMDIAVEA++LAQAIGRNGQNVRLA+QLTGWELNVMTV D+ KKHQ ES    
Sbjct: 301 IVDEDNHSMDIAVEAESLAQAIGRNGQNVRLATQLTGWELNVMTVEDMNKKHQAESAKVK 360

Query: 357 ENFMKYLDIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTT 416
             FMK LD+++DFA++L +EGF++LEE+AYVP++ELL +DG DEDL + LR RAK A++T
Sbjct: 361 SLFMKSLDVDEDFAQVLADEGFTSLEEVAYVPVSELLAIDGFDEDLVEALRERAKAAIST 420

Query: 417 IALAKEESFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIEGLTEQ 476
            ALA EE+ +G+EP+E+LLAL G+ER +A+ LA+KG+ TLEDLA+QG+DDL  IE LTE+
Sbjct: 421 RALASEEALDGVEPSEELLALEGVERHLAYVLASKGIVTLEDLAEQGIDDLIEIEELTEE 480

Query: 477 RAGELIMAARNICWFGEDA 495
           +AGELIMAARNICWFGE+A
Sbjct: 481 KAGELIMAARNICWFGEEA 499