Pairwise Alignments

Query, 495 a.a., transcription termination/antitermination protein NusA from Vibrio cholerae E7946 ATCC 55056

Subject, 428 a.a., N utilization substance protein A (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  281 bits (719), Expect = 3e-80
 Identities = 148/412 (35%), Positives = 257/412 (62%), Gaps = 10/412 (2%)

Query: 1   MSKEILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFR 60
           MS E+   ++ +S +K + R+ +   LE A+ TS  +KY  +IDV V+ + ++G  E ++
Sbjct: 1   MSMELKKAIDQISKDKGLERDMLVATLEEAVRTSVVRKYGDDIDVEVSYNDESGEIEVYQ 60

Query: 61  RWLVVENVEHPTKE----ISFEAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQVIVQ 116
             +VV  ++   ++    I  E A   D SVQ+ D +  +++     RI  Q+AKQVI+Q
Sbjct: 61  FKIVVAELDDEDEDGNAHIVLEEARKHDPSVQIDDEMGFRLKVEDLGRIAAQSAKQVIIQ 120

Query: 117 KVREAERAQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPG 176
           ++R+AE+  I ++F D  GE+++G++++ ++   I++LG   EA++ +E+Q+PRE+++ G
Sbjct: 121 RMRDAEQELIYDEFKDRRGEIISGIIQRRDKAGWIINLGRT-EALLPKEEQIPREHYKRG 179

Query: 177 DRVRGLLYKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKI 236
           DRV+ ++ +V  E RG Q+ ++RS  + +A LFR EVPE+ +  +++   ARDPGSRAK+
Sbjct: 180 DRVQAIIIEVRKEGRGPQVIVSRSHRDYMAALFRREVPEVDDGTVQIMGVARDPGSRAKV 239

Query: 237 AVKTNDKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASI 296
           AV + ++ +DPVGACVG+RG+R+Q V  EL GERIDIV+W    A +  NA++PA ++ I
Sbjct: 240 AVLSRERDVDPVGACVGIRGSRIQNVVQELRGERIDIVVWSPEIATYARNALSPAVISRI 299

Query: 297 IMDEDAHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASI 356
           ++DE+ + +++ V  D L  AIGR GQNV+LA++L GW++++ T     +    E+ A  
Sbjct: 300 VVDEEENLLEVIVPDDQLTNAIGRKGQNVKLAAKLLGWKIDIYT-----ETRYNEANAIG 354

Query: 357 ENFMKYLDIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRS 408
               +   + +   E  V  GF ++E +      EL    G+D++   +LR+
Sbjct: 355 RGLEQIASVAEISIEQFVTAGFQSIERLREASDEELASGLGIDDNRIADLRA 406