Pairwise Alignments

Query, 495 a.a., transcription termination/antitermination protein NusA from Vibrio cholerae E7946 ATCC 55056

Subject, 544 a.a., NusA antitermination factor (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  396 bits (1018), Expect = e-115
 Identities = 217/459 (47%), Positives = 305/459 (66%), Gaps = 3/459 (0%)

Query: 4   EILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRRWL 63
           E+L   EAV+ EK +    + EA+E +LA + K +Y  E+D+RV+IDRKTG     R   
Sbjct: 10  ELLQTAEAVAREKMIDPGLVIEAMEESLARAAKSRYGSEMDIRVSIDRKTGVATFTRVRT 69

Query: 64  VVEN--VEHPTKEISFEAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQVIVQKVREA 121
           VVE+  +E+   E++ E A    D  ++GD I DQ+  V   RI  Q+AKQVI+QKVREA
Sbjct: 70  VVEDEELENYQAELTVEQAKPYLDDPKVGDTIVDQVPPVEMGRIAAQSAKQVILQKVREA 129

Query: 122 ERAQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVRG 181
           ER +  E+F D  G ++ GVVK+     VI+D+G   E V+ R +++ RE++RP DR+R 
Sbjct: 130 ERDRQYEEFKDRAGTIINGVVKREEYGNVIVDIGRG-EGVLRRNEKIGRESYRPNDRIRC 188

Query: 182 LLYKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAVKTN 241
            +  V  E RG Q+F++R+ PE +AELF++EVPEI + +IE+KA ARDPGSRAKIAV + 
Sbjct: 189 YIKDVRREVRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAKIAVISY 248

Query: 242 DKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDED 301
           D  IDPVGACVGMRG+RVQAV  EL GE+IDI+ W+++   F++NA+ PA+V+ +++DED
Sbjct: 249 DGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSKVVLDED 308

Query: 302 AHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMK 361
           A  +++ V  + L+ AIGR GQNVRLASQLTG ++++MT A   ++ Q E       F++
Sbjct: 309 AERIEVVVPDEQLSLAIGRRGQNVRLASQLTGLDIDIMTEAQESERRQAEFAERTNMFVE 368

Query: 362 YLDIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTTIALAK 421
            LD+++  A+LLV EGF+ LEE+AYV   ELL +DG DED A+EL++RA+E L   A   
Sbjct: 369 ALDVDEVLAQLLVSEGFTNLEEVAYVEQEELLVIDGFDEDTAEELQTRAREFLEEQAKKA 428

Query: 422 EESFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLA 460
            E    +   + L+   GL   M   LAA GV TLED A
Sbjct: 429 LERAREMGVEDSLVEFEGLTPQMLEALAADGVKTLEDFA 467



 Score = 30.0 bits (66), Expect = 2e-04
 Identities = 35/176 (19%), Positives = 75/176 (42%), Gaps = 11/176 (6%)

Query: 312 DNLAQAIGRNGQNVR-LASQLTGWELNVMTVADLQKKHQEESMASIENFMKYLDIEQDFA 370
           D +   +G  G  V+ + ++L G +++++   + Q      ++   E     LD + +  
Sbjct: 253 DPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSKVVLDEDAERI 312

Query: 371 ELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTTIALAKEESFEGLEP 430
           E++V +     E+++       +   G +  LA +L     + +T    ++    E  E 
Sbjct: 313 EVVVPD-----EQLSLA-----IGRRGQNVRLASQLTGLDIDIMTEAQESERRQAEFAER 362

Query: 431 AEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIEGLTEQRAGELIMAAR 486
               +    ++  +A  L ++G   LE++A    ++L  I+G  E  A EL   AR
Sbjct: 363 TNMFVEALDVDEVLAQLLVSEGFTNLEEVAYVEQEELLVIDGFDEDTAEELQTRAR 418