Pairwise Alignments

Query, 495 a.a., transcription termination/antitermination protein NusA from Vibrio cholerae E7946 ATCC 55056

Subject, 548 a.a., N utilization substance protein A NusA from Caulobacter crescentus NA1000

 Score =  371 bits (952), Expect = e-107
 Identities = 199/482 (41%), Positives = 304/482 (63%), Gaps = 7/482 (1%)

Query: 4   EILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRRWL 63
           E+L + +AV+ EK + +E + EA+E AL  + + +Y  E D+RV ID KTG     R   
Sbjct: 11  ELLQIADAVAREKGIEKEVVIEAIEDALQKAARARYGAEHDIRVKIDPKTGETTQKRVIE 70

Query: 64  VVEN---VEHPTKEISFEAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQVIVQKVRE 120
           VV +   +E    ++ F  A       ++G   E+ +      R+ TQ A+QV++ KVRE
Sbjct: 71  VVSDDAELEGEIGKMPFSIAKRTWRDAEIGKVYEEVLPPFEIGRVQTQMARQVVMHKVRE 130

Query: 121 AERAQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVR 180
           AER +  +++ D  GE+V G VK+V    VI+DLG   E ++ R+  +PRENF  GDR+R
Sbjct: 131 AERERQYDEYKDRVGEIVNGSVKRVEYGNVIVDLGRG-EGIMRRDQSIPRENFNVGDRIR 189

Query: 181 GLLYKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAVKT 240
             +Y V  E +G Q+ ++R+    +A+LF  EVPE+ + +IE++A ARDPGSRAK+AV +
Sbjct: 190 AYIYDVRRETKGPQIMLSRAHGGFMAKLFAQEVPEVYDGVIEIRAVARDPGSRAKMAVIS 249

Query: 241 NDKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDE 300
           ND  IDPVGACVGMRG+RVQAV  EL GE+IDI+ W ++ A F++NA+APA+V+ ++MDE
Sbjct: 250 NDGSIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWSEDEATFIVNALAPAEVSKVVMDE 309

Query: 301 DAHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFM 360
           +   +++ V  + L+ AIGR GQNVRLASQLTGW++++MT +   ++ Q E       F 
Sbjct: 310 EDERVEVVVPDEQLSLAIGRRGQNVRLASQLTGWQIDIMTESQESERRQREFAERTALFQ 369

Query: 361 KYLDIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTTIALA 420
           + LD+++  A+LLV EGF+ +E++AYV  +E+  ++G DE+ A+EL++RA+E L   A  
Sbjct: 370 EALDVDEVIAQLLVTEGFAAVEDVAYVEPHEIASIEGFDEETAEELQTRAREFLEKEAAE 429

Query: 421 KEESFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIEGLTEQRAGE 480
            +   + L   ++LL + G+   MA  L    V ++EDLA    DD+    G  E + GE
Sbjct: 430 LDAKRKALGVEDELLTIEGVTLAMAVALGEGDVKSIEDLAGLVPDDM---RGWFENKGGE 486

Query: 481 LI 482
            +
Sbjct: 487 RV 488



 Score = 33.1 bits (74), Expect = 3e-05
 Identities = 36/176 (20%), Positives = 76/176 (43%), Gaps = 11/176 (6%)

Query: 312 DNLAQAIGRNGQNVR-LASQLTGWELNVMTVADLQKKHQEESMASIENFMKYLDIEQDFA 370
           D +   +G  G  V+ + ++L G +++++  ++ +      ++A  E     +D E +  
Sbjct: 255 DPVGACVGMRGSRVQAVVAELQGEKIDIIQWSEDEATFIVNALAPAEVSKVVMDEEDERV 314

Query: 371 ELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTTIALAKEESFEGLEP 430
           E++V +     E+++       +   G +  LA +L     + +T    ++    E  E 
Sbjct: 315 EVVVPD-----EQLSLA-----IGRRGQNVRLASQLTGWQIDIMTESQESERRQREFAER 364

Query: 431 AEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIEGLTEQRAGELIMAAR 486
                    ++  +A  L  +G A +ED+A     ++  IEG  E+ A EL   AR
Sbjct: 365 TALFQEALDVDEVIAQLLVTEGFAAVEDVAYVEPHEIASIEGFDEETAEELQTRAR 420