Pairwise Alignments

Query, 495 a.a., transcription termination/antitermination protein NusA from Vibrio cholerae E7946 ATCC 55056

Subject, 491 a.a., transcription termination factor NusA from Ralstonia sp. UNC404CL21Col

 Score =  486 bits (1250), Expect = e-141
 Identities = 247/494 (50%), Positives = 361/494 (73%), Gaps = 7/494 (1%)

Query: 1   MSKEILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFR 60
           MS+E+L +V+A++ EK V ++ +F ALE ALA++TKK++E ++DVRVAIDR++G  ETFR
Sbjct: 1   MSREVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVDVRVAIDRESGEHETFR 60

Query: 61  RWLVVEN---VEHPTKEISFEAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQVIVQK 117
           RWLVV +   ++ P K+I    A   +  + + D++E+QIESV F RI  Q AKQVI+Q+
Sbjct: 61  RWLVVPDDAGLQEPDKQILLFEAKEQNPDLDVDDFVEEQIESVEFGRIGAQAAKQVILQR 120

Query: 118 VREAERAQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGD 177
           +R+AER QI+  ++D   +++TG +K+ +++ +I++ G   EA++ R+  +P+EN R GD
Sbjct: 121 IRDAEREQILNDYLDRGEKVMTGTIKRADKKGLIVETGR-VEALLARDQMIPKENLRTGD 179

Query: 178 RVRGLLYKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIA 237
           RVR  +  V   ARG Q+ ++R+ PE L +LF  EVPE+ + L+E+KAAARDPG RAKIA
Sbjct: 180 RVRAYILNVDRTARGPQIELSRTCPEFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIA 239

Query: 238 VKTNDKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASII 297
           V  +DKRIDP+G CVG+RG RV AV  E+GGE +DIVLW ++PAQFVI A+APA V SI+
Sbjct: 240 VVAHDKRIDPIGTCVGVRGTRVTAVRNEVGGEAVDIVLWSEDPAQFVIGALAPAQVQSIV 299

Query: 298 MDEDAHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIE 357
           +DE+ HSMD+ V+ +NLA AIGR+GQNVRLAS+LTGW++N+MT A+  +K  EES    +
Sbjct: 300 VDEEKHSMDVVVDEENLAVAIGRSGQNVRLASELTGWQINIMTPAESAQKQAEESSVVRQ 359

Query: 358 NFMKYLDIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTTI 417
            FM  LD++++ A++L+EEGFS+LEE+AYVP+ E+L+++  DED  +ELR+RA++ L T+
Sbjct: 360 LFMAKLDVDEEVADILIEEGFSSLEEVAYVPLQEMLEIEAFDEDTVNELRNRARDVLLTM 419

Query: 418 ALAKEESFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIEGLTEQR 477
            LAKEE  E  + ++DL  L GL  ++  KLA   + T +DLA+  VD+L  + G+ E++
Sbjct: 420 ELAKEEKVE--KVSQDLRDLEGLTPELIGKLAEGNIQTRDDLAELAVDELVEMTGVDEEQ 477

Query: 478 AGELIMAARNICWF 491
           A  LIM AR   WF
Sbjct: 478 AKALIMKARE-HWF 490