Pairwise Alignments

Query, 495 a.a., transcription termination/antitermination protein NusA from Vibrio cholerae E7946 ATCC 55056

Subject, 439 a.a., putative nitrogen utilization substance protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  193 bits (491), Expect = 9e-54
 Identities = 121/436 (27%), Positives = 229/436 (52%), Gaps = 16/436 (3%)

Query: 3   KEILAVVEAVSNEKA---VPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETF 59
           +E +++++  S  K    + R  +   LE +  +   K +  + +  V ++   G FE +
Sbjct: 5   EETISLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDFEIW 64

Query: 60  RRWLVV--ENVEHPTKEISFEAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQVIVQK 117
           R   VV  E++ +P  +IS   A   D S + G+ + D++    F R      +Q +  K
Sbjct: 65  RNREVVADEDLTNPNMQISLTEAQKIDASYEEGEEVTDEVIFAKFGRRAILNLRQTLASK 124

Query: 118 VREAERAQIVEQFIDNEGELVTGVVKKV-NRETVILDLGNNAEAVILREDQLPRENFRPG 176
           + E E+  I  ++ID  G ++   V ++  +E ++LD   N E ++ + +Q+P + +R G
Sbjct: 125 ILELEKDSIYNKYIDKVGTIINAEVYQIWKKEMLLLDDEGN-ELLLPKTEQIPSDFYRKG 183

Query: 177 DRVRGLLYKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKI 236
           +  R ++ +V  +    ++ ++R+ P  L  LF +EVPEI + LI +K  AR PG RAKI
Sbjct: 184 ETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERAKI 243

Query: 237 AVKTNDKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASI 296
           AV++ D RIDPVGACVG++G+R+  +  EL  E ID++ +  N + F+  A++PA ++SI
Sbjct: 244 AVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNISLFIQRALSPAKISSI 303

Query: 297 IMDEDAHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASI 356
            ++E+    ++ ++ + ++ AIG+ G N++LAS LT + ++V        +  +E++A  
Sbjct: 304 RLNEEEKKAEVFLKPEEVSLAIGKGGLNIKLASMLTEYTIDVF-------RELDENVADE 356

Query: 357 ENFMKYLDIEQD--FAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEAL 414
           + ++     E D    + +   G  T + +   P   L++   ++E+  DE+    K   
Sbjct: 357 DIYLDEFRDEIDGWVIDAIKAIGIDTAKAVLNAPREMLIEKTDLEEETVDEVIRILKSEF 416

Query: 415 TTIALAKEESFEGLEP 430
                A+ E     EP
Sbjct: 417 EEEPAAEMEPETEAEP 432