Pairwise Alignments

Query, 495 a.a., transcription termination/antitermination protein NusA from Vibrio cholerae E7946 ATCC 55056

Subject, 491 a.a., transcription termination factor NusA from Burkholderia phytofirmans PsJN

 Score =  466 bits (1200), Expect = e-136
 Identities = 242/494 (48%), Positives = 351/494 (71%), Gaps = 7/494 (1%)

Query: 1   MSKEILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFR 60
           MS+E+L +V+A++ EK V ++ +F ALE ALA+++KK +E + D+RV IDR++G  ETFR
Sbjct: 1   MSREVLMLVDALAREKNVDKDVVFAALEAALASASKKLFEEDADIRVQIDRESGEHETFR 60

Query: 61  RWLVVEN---VEHPTKEISFEAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQVIVQK 117
           RW VV +   ++ P +EI    A      +QL ++IE+ + S+ F RI  Q AKQVI+QK
Sbjct: 61  RWKVVPDEAGLQEPDQEILLFEAREQKPEIQLDEFIEEPVPSIEFGRIGAQAAKQVILQK 120

Query: 118 VREAERAQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGD 177
           VR+AER QI+  F++    ++TG VK++++   I++ G   EA++ R+  +P+EN R GD
Sbjct: 121 VRDAEREQILNDFLERGEHIMTGSVKRLDKGNFIVETGR-VEALLRRDQLIPKENLRVGD 179

Query: 178 RVRGLLYKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIA 237
           RVR  + KV   ARG Q+ ++R+ PE L +LF +EVPEI + L+E+KAAARDPG RAKI 
Sbjct: 180 RVRAYIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIG 239

Query: 238 VKTNDKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASII 297
           V   DKRIDP+G CVG+RG+RVQAV  ELGGE +DIVLW ++PAQFVI A+APA V SI+
Sbjct: 240 VVAYDKRIDPIGTCVGIRGSRVQAVRNELGGENVDIVLWSEDPAQFVIGALAPAAVQSIV 299

Query: 298 MDEDAHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIE 357
           +DE+ HSMD+ V+ + LA AIGR+GQNVRLAS+LTGW++N+MT  +  +K  +E     +
Sbjct: 300 VDEEKHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNQERGVLRD 359

Query: 358 NFMKYLDIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTTI 417
            FM  LD++++ A++L++EGF++LEEIAYVP+NE+L+++  DED   ELR+R+++AL T 
Sbjct: 360 LFMARLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTQ 419

Query: 418 ALAKEESFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIEGLTEQR 477
           A+A EE  E +  A DL +L G++ D+  KLA   + T ++LA+  VD+L  + G+ E  
Sbjct: 420 AIANEEKVENV--ALDLKSLDGMDADLLAKLAEHQIQTRDELAELAVDELVEMTGMEEDA 477

Query: 478 AGELIMAARNICWF 491
           A  LIM AR   WF
Sbjct: 478 AKALIMKARE-HWF 490