Pairwise Alignments

Query, 651 a.a., ATP-dependent zinc metalloprotease FtsH from Vibrio cholerae E7946 ATCC 55056

Subject, 495 a.a., ATPase, AAA family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 95.5 bits (236), Expect = 5e-24
 Identities = 80/286 (27%), Positives = 134/286 (46%), Gaps = 29/286 (10%)

Query: 155 FSDVAGCDEAKEDVKELVDYLRDPSRFQKLGG-KIPTGVLMVGPPGTGKTLLAKAIAGEA 213
           FS +AG    K+ +K+       P           P GVL++G  G+GK+L AKA+AG  
Sbjct: 232 FSQIAGLHNLKKWLKQRAPAAHSPQGVSAAAQIDTPKGVLLLGVQGSGKSLAAKAVAGVW 291

Query: 214 KVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKASPCIIFIDEIDAVGRQRGAGVGGGHD 273
           + P   +        ++G     +R+  E A   SPCI++IDEI+        G+ G + 
Sbjct: 292 QRPLLRLDMGALYNKYIGETEKNLRNALELADMMSPCILWIDEIE-------KGLSGSNS 344

Query: 274 ER---EQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRG 330
           ++    + L  +L  M   E    + V+A  N    L P L+R GR D    V LPD   
Sbjct: 345 DQGISTRILGTLLTWM--AERKSEVFVVATANDIQALPPELMRKGRMDEIFFVDLPDETI 402

Query: 331 REQILKVHMRKVPL-ANDVEPSLIARGTPGFSGADLANLVNEAALFAAR--GNKRNVSMV 387
           R+ I  +H ++  +  + ++ + ++R + GFSGA++   V  AA+++AR  G   +  ++
Sbjct: 403 RKAIFLIHCQRRGIDVSRLDLAQLSRHSQGFSGAEIEQAV-IAAMYSARSLGRTLDQDLL 461

Query: 388 EFELAKDKIMMGAERRSMVMSEEIKESTAYHEAGHAVVGRLVPEHD 433
             EL K + +      S+VM ++I     +        GR V  H+
Sbjct: 462 LEELTKTRPL------SIVMGDKINALRQW------AAGRTVNAHE 495