Pairwise Alignments

Query, 209 a.a., ribosomal RNA large subunit methyltransferase E from Vibrio cholerae E7946 ATCC 55056

Subject, 237 a.a., RlmE family RNA methyltransferase from Rhodopseudomonas palustris CGA009

 Score =  164 bits (414), Expect = 2e-45
 Identities = 93/204 (45%), Positives = 126/204 (61%), Gaps = 4/204 (1%)

Query: 9   SSTRWLKEHFDDKYVNEAKKKGYRSRAIFKIEEIQNKDKLLKAGMTVVDLGAAPGGWSQF 68
           SS  WL+   +D YV +AK+ GYRSRA +K+ EI +K +LLK+GM VVDLGAAPGGWSQ 
Sbjct: 22  SSKLWLERQLNDPYVAQAKRDGYRSRAAYKLTEIDDKFRLLKSGMAVVDLGAAPGGWSQV 81

Query: 69  AAKVVGEG---GRVIACDLLPMESIAGVSFLQGDFREEAVLNALLDRIQPDMVDVVMSDM 125
           AAK VG     G+V+A DLL M  + GV+F Q DF + +    L + +     D+VMSDM
Sbjct: 82  AAKKVGAADGRGKVVAIDLLEMGEVPGVTFAQLDFLDPSAPERLREMLGGG-ADIVMSDM 140

Query: 126 APNMAGNLSVDQPRAMYLVELALDMCRQVLAPNGSFVVKVFQGEGFDDYVKAVRDLFKVV 185
           A N  G+   DQ R + LVE A     +VL P G+F+ KVFQ       +  ++  +  V
Sbjct: 141 AANTTGHRKTDQLRIVGLVETAAMFASEVLKPGGTFLAKVFQSGADASLMTELKRDYASV 200

Query: 186 KIRKPDSSRSRSREVFIVATGYKG 209
           K  KP +SR  S E +++ATG++G
Sbjct: 201 KHVKPAASRKDSSERYLLATGFRG 224