Pairwise Alignments

Query, 209 a.a., ribosomal RNA large subunit methyltransferase E from Vibrio cholerae E7946 ATCC 55056

Subject, 251 a.a., ribosomal RNA large subunit methyltransferase J from Phaeobacter inhibens DSM 17395

 Score =  141 bits (355), Expect = 1e-38
 Identities = 87/209 (41%), Positives = 116/209 (55%), Gaps = 9/209 (4%)

Query: 9   SSTRWLKEHFDDKYVNEAKKKGYRSRAIFKIEEIQNKDKLLKAGMTVVDLGAAPGGWSQF 68
           SSTRWL+   +D YV  A+ +GYR RA +KI E+ +K + L  G  VVDLG APGGW+Q 
Sbjct: 36  SSTRWLQRQLNDPYVKRAQAEGYRGRAAYKIMEVDDKFRFLINGARVVDLGCAPGGWAQV 95

Query: 69  AAK---VVGEG-----GRVIACDLLPMESIAGVSFLQGDFREEAVLNALLDRIQPDMVDV 120
           A K    +GE      GR+I  DL  +E +AG  F Q DF ++   + + + +     DV
Sbjct: 96  AVKRINALGEKPGKAVGRIIGVDLQEVEPLAGAEFHQLDFMDDGADDKVKEWL-GGKADV 154

Query: 121 VMSDMAPNMAGNLSVDQPRAMYLVELALDMCRQVLAPNGSFVVKVFQGEGFDDYVKAVRD 180
           VMSDMA   +G+   D  R + L E A      VL   G+FV KV  G    +  K ++ 
Sbjct: 155 VMSDMAAASSGHKQTDHLRIISLCETAAYFAFDVLEDGGTFVAKVLAGGAEGELQKLLKQ 214

Query: 181 LFKVVKIRKPDSSRSRSREVFIVATGYKG 209
            F  V   KP SSRS S E F+VATG++G
Sbjct: 215 KFTKVYHVKPPSSRSDSSEKFVVATGFRG 243