Pairwise Alignments

Query, 209 a.a., ribosomal RNA large subunit methyltransferase E from Vibrio cholerae E7946 ATCC 55056

Subject, 258 a.a., RlmE family RNA methyltransferase from Methanococcus maripaludis JJ

 Score =  143 bits (360), Expect = 3e-39
 Identities = 75/200 (37%), Positives = 118/200 (59%), Gaps = 3/200 (1%)

Query: 12  RWLKEHFDDKYVNEAKKKGYRSRAIFKIEEIQNKDKLLKAGMTVVDLGAAPGGWSQFAAK 71
           RW+ +  +D Y N AK++ YRSRA +K+ ++  K  L+K    VVDLG APGGW Q A  
Sbjct: 7   RWVLQRKNDHYYNLAKRRNYRSRATYKLFQLNEKFNLIKERNVVVDLGCAPGGWLQAARD 66

Query: 72  VVGEGGRVIACDLLPMESIA--GVSFLQGDFREEAVLNALLDRIQPDMVDVVMSDMAPNM 129
           +VG+ G ++  DL  ++ +    V  ++GD  +E +L    D + P+  DV++ D +PN+
Sbjct: 67  IVGDNGFIVGIDLQTVKPLPHDNVIAIKGDMTKEEILKQARD-LLPEKPDVIICDASPNI 125

Query: 130 AGNLSVDQPRAMYLVELALDMCRQVLAPNGSFVVKVFQGEGFDDYVKAVRDLFKVVKIRK 189
           +G   VD  R++ L  +AL    ++L   G+FVVKVFQG+ F+ YV+ V + F      K
Sbjct: 126 SGVWDVDHVRSLELTTMALMTATKMLKKGGNFVVKVFQGDLFEKYVQLVSEYFDKAFTTK 185

Query: 190 PDSSRSRSREVFIVATGYKG 209
           P +SR  S EV+++   + G
Sbjct: 186 PRASRDESAEVYVIGKRFNG 205