Pairwise Alignments

Query, 209 a.a., ribosomal RNA large subunit methyltransferase E from Vibrio cholerae E7946 ATCC 55056

Subject, 204 a.a., ribosomal RNA large subunit methyltransferase J (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  151 bits (382), Expect = 7e-42
 Identities = 85/195 (43%), Positives = 119/195 (61%), Gaps = 5/195 (2%)

Query: 18  FDDKYVNEAKKKGYRSRAIFKIEEIQNKDKLLKAGMTVVDLGAAPGGWSQFAAKVVGEGG 77
           + D Y  +AK++ Y +R+++K++EI N+ K+ + GM V+DLGAAPG WS  AA+ VG  G
Sbjct: 4   YRDHYFLKAKQENYPARSVYKLKEIDNRFKIFRQGMKVLDLGAAPGSWSLGAAEKVGPRG 63

Query: 78  RVIACDLLPMESIA--GVSFLQGD-FREEAVLNALLDRIQPDMVDVVMSDMAPNMAGNLS 134
           RV+ACDL   +++    V+F+Q + F        LLD I P   DVV+SDMAP   G   
Sbjct: 64  RVLACDLQETDTVFPDNVTFMQENVFERSEAFENLLDEIAP--FDVVISDMAPRTTGTRF 121

Query: 135 VDQPRAMYLVELALDMCRQVLAPNGSFVVKVFQGEGFDDYVKAVRDLFKVVKIRKPDSSR 194
            DQ R++ L   AL +  + L   GSFVVK+F G    + V+A+R  F  VK  KP SSR
Sbjct: 122 TDQARSLELCLEALAVADRCLIKGGSFVVKIFMGPDVQELVQAMRQRFSAVKSFKPKSSR 181

Query: 195 SRSREVFIVATGYKG 209
           + S+E F V  GY+G
Sbjct: 182 AESKETFYVCLGYRG 196