Pairwise Alignments

Query, 209 a.a., ribosomal RNA large subunit methyltransferase E from Vibrio cholerae E7946 ATCC 55056

Subject, 257 a.a., ribosomal RNA methyltransferase RrmJ/FtsJ (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  132 bits (332), Expect = 6e-36
 Identities = 84/209 (40%), Positives = 112/209 (53%), Gaps = 9/209 (4%)

Query: 9   SSTRWLKEHFDDKYVNEAKKKGYRSRAIFKIEEIQNKDKLLKAGMTVVDLGAAPGGWSQF 68
           SST WL+   +D YV +AK++GYR RA FKI EI  + + L  G  VVDLG APGGW Q 
Sbjct: 42  SSTLWLERQLNDPYVQKAKREGYRGRAAFKILEIDERFRFLVPGARVVDLGCAPGGWCQV 101

Query: 69  AAK---VVGE-----GGRVIACDLLPMESIAGVSFLQGDFREEAVLNALLDRIQPDMVDV 120
           A +    +GE      GRV+  DL  ++ + G      DF E+   +A +        DV
Sbjct: 102 AVRRVNALGEKSGKAQGRVLGVDLKEIDPVPGAETHVLDFMEDGA-DAQVKAWLGGKADV 160

Query: 121 VMSDMAPNMAGNLSVDQPRAMYLVELALDMCRQVLAPNGSFVVKVFQGEGFDDYVKAVRD 180
           VMSDMA   +G+   D  R + L E A  +   VL   G+FV KV  G    +    ++ 
Sbjct: 161 VMSDMAAASSGHKQTDHLRIVALCEAAAHLAFDVLEEGGTFVAKVLAGGAERELQTLLKR 220

Query: 181 LFKVVKIRKPDSSRSRSREVFIVATGYKG 209
            F  V   KPD+SRS S E F+VATG++G
Sbjct: 221 AFTKVINVKPDASRSDSSEKFVVATGFRG 249