Pairwise Alignments

Query, 350 a.a., porin from Vibrio cholerae E7946 ATCC 55056

Subject, 308 a.a., porin (RefSeq) from Shewanella amazonensis SB2B

 Score = 72.4 bits (176), Expect = 1e-17
 Identities = 83/352 (23%), Positives = 147/352 (41%), Gaps = 53/352 (15%)

Query: 7   LNKMNKTLIALAVSAAAVATGAYADGINQSGDKAGSTVYSAKGTSLEVGGRAEARLSLKD 66
           +N  NKTL+  A++AA++A+   A+ +         TVY     +++    A    ++  
Sbjct: 2   MNAFNKTLLVSALTAASLASAQAAEPL---------TVYGKLNVTVQSNDEAGESETVVQ 52

Query: 67  GKAQDNSRVRLNFLGKAEINDSLYGVGFYEGEFTTNDQGKNASNNSLDNRYTYAGIGGTY 126
             A      RL   G  E++ SL    FY  E+   D G +A  N L  R  + G+ G +
Sbjct: 53  SNAS-----RLGVKGAFELSSSLEA--FYTIEYEV-DAGSDAKENFLA-RNQFVGLKGNF 103

Query: 127 GEVTYGKNDGALGVITDFTDIMSYHGNTAAEKIAVADRVDNMLAYKG-QFGDLGVKASYR 185
           G ++ G+ND  L +     D  +             +R++  + Y   +FG   V A+Y 
Sbjct: 104 GALSVGRNDTMLKIAQGKVDQFNDLSGDLKSLFKGENRIEQTVTYLSPEFGGFKVGATYA 163

Query: 186 FADRNAVDAMGNVVTETNAAKYSDNGEDGYSLSAIYTFGDTGFNVGAGYA----DQDDQN 241
                              AK S  GEDG+SL+A+Y  GD      A YA    D + + 
Sbjct: 164 ----------------AEGAK-SQAGEDGFSLAAMY--GDASLKKSAFYASVAYDSEVKG 204

Query: 242 EYMLAASY--RMENLYFAGLFTDGELAKDVD-YTGYELAAGYKLGQAAFTATYNNAETAK 298
             +L A+   ++  L   G++   E + D D  TGY ++A Y +        + +     
Sbjct: 205 YDILRATVQAKLAGLVLGGMYQQEEKSVDGDSKTGYLVSAAYNIADVTLKGQFQD----M 260

Query: 299 ETSADNFAIDATYYFKPNFRSYISYQFNLLDSDKVGKVASEDELAIGLRYDF 350
           E   D+++I A Y      + +  Y    ++S +     +++ + +G+ + F
Sbjct: 261 EDKGDSWSIGADYKLGKPTKIFAFYTSRDMESAE----DTDNYIGVGIEHKF 308