Pairwise Alignments

Query, 350 a.a., porin from Vibrio cholerae E7946 ATCC 55056

Subject, 345 a.a., outer membrane porin, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 64.3 bits (155), Expect = 4e-15
 Identities = 84/374 (22%), Positives = 142/374 (37%), Gaps = 62/374 (16%)

Query: 10  MNKTLIALAVSAAAVATGAYADGINQSGDKAGSTVYSAKGTSLEVGGRAEARLSLKDGKA 69
           MNK+     ++ A  AT A AD     G    S  +S  G++             K G  
Sbjct: 1   MNKSFAISLLTLALCATQAVADEHKFYGRIDYSVTHSDSGSATHKN---------KSGTI 51

Query: 70  QDNSRVRLNFLGKAEINDSLYGVGFYEGEFTTNDQGKNASNNSLDNRYTYAGIG-GTYGE 128
            +N+  R    G +++ DS     FY+ E   N + +++ +     R T+ G+   TYG 
Sbjct: 52  LENNFSRFGIKGSSQLTDSTSL--FYQIEVGVNGESQDSGDKPFSARPTFIGVKHSTYGA 109

Query: 129 VTYGKNDGALGVITDFTDIMSYHGNTAAEKIAVADRVDNMLAYKGQFGDLGVKASYRFAD 188
           +  G+ D    +    +D M  +            + D + A   ++GD      Y+ A 
Sbjct: 110 LAVGRIDPVFKMAKGMSDAMDNYSL----------KHDRLFAGDKRWGD---SFEYKSAH 156

Query: 189 RNAVDAMGNVVTETNAAKYSDNGEDGYSLSAIYTFGDTGFNVGAGYA------DQDDQNE 242
            N +    + + E N    +DN  D  +     T+GD  F     YA        +D   
Sbjct: 157 WNKLQLGVSYLLEDNHYSNNDNRRDNGNYQLAVTYGDKFFKTSDVYAAVAYSDGVEDIEA 216

Query: 243 YMLAASYRMENLYFAGLFTDGELAKDVDYTGYE--------LAAGYKLGQAAFTATY--- 291
           Y     Y+ +   FA +    +L  + D T ++        ++A Y+LGQ +  A Y   
Sbjct: 217 YRGVIQYKWDKWQFATMLQHSQLV-NTDKTDWQQREGDGVIVSAKYQLGQLSLNAQYGFD 275

Query: 292 --------NNAETAKETSAD------NFAIDATYYFKPNFRSYISY-QFNLLDSDKVGKV 336
                   N    +K T  D       +AI A Y    + R +    QF++   D     
Sbjct: 276 NSGTGLIANRIYASKNTLIDEVPEISQWAIGAEYKLSKSTRLHTEIGQFDVKQYDDF--- 332

Query: 337 ASEDELAIGLRYDF 350
             +  +++G+RYDF
Sbjct: 333 -DDTIVSLGMRYDF 345