Pairwise Alignments

Query, 350 a.a., porin from Vibrio cholerae E7946 ATCC 55056

Subject, 382 a.a., outer membrane pore protein N, non-specific from Klebsiella michiganensis M5al

 Score = 97.1 bits (240), Expect = 7e-25
 Identities = 94/397 (23%), Positives = 156/397 (39%), Gaps = 71/397 (17%)

Query: 10  MNKTLIALAVSAAAVATGAYADGINQSGDKAGSTVYSAKGTSLEVGGRAEARLSLKDGKA 69
           M + ++AL + A   A  A++           + +Y+  G  L++ G+ +      D  +
Sbjct: 1   MKRKVLALVIPALLAAGAAHS-----------AEIYNKDGNKLDLYGKVDGLHYFSDDSS 49

Query: 70  QDN--SRVRLNFLGKAEINDSLYGVGFYEGEFTTNDQGKNASNNSLDNRYTYAGIG-GTY 126
           +D   S VRL F G+ +IND L G G +E     N+     S+N    R  +AG+    Y
Sbjct: 50  KDGDQSYVRLGFKGETQINDQLTGYGQWEYNVQANNT--EGSDNQAWTRLAFAGLKFANY 107

Query: 127 GEVTYGKNDGALGVITDFTDIMSYHGN---TAAEKIAVADRVDNMLAYK-----GQFGDL 178
           G   YG+N G L  +  +TD++   G    T A+   +  R + +  Y+     G    L
Sbjct: 108 GSFDYGRNYGVLYDVEGWTDMLPEFGGDSYTQADNF-MTGRANGVATYRNNDFFGLVNGL 166

Query: 179 GVKASYRFADRN-AVDAMGNVVTETNAAKYSDNGEDGYSLSAIYTFGDTGFNVGAGYADQ 237
                Y+  + N + D         N     ++  DG+ LS+ Y  G  G ++ A Y+  
Sbjct: 167 NFALQYQGKNENQSGDENQEGTANNNGRNVKNSNGDGFGLSSSYDLG-MGVSIAAAYSSS 225

Query: 238 DDQNE--------------YMLAASYRMENLYFAGLFTD--------------GELAKDV 269
           D  NE              +     Y   N+Y A ++++                  ++ 
Sbjct: 226 DRTNEQTHYSTAGGDKADAWTAGLKYDANNIYLATMYSETRNMTPYGNNSDTIANKTQNF 285

Query: 270 DYT-------GYELAAGYKLGQAAFTATYNNAETAKETSADN-----FAIDATYYFKPNF 317
           + T       G   A  Y   +        NA      + D        I ATYYF  N 
Sbjct: 286 EVTAQYQFDFGLRPAISYLQSKGKDLVMQGNAANPAGNTGDKDLVKYVDIGATYYFNRNM 345

Query: 318 RSYISYQFNLLDSD----KVGKVASEDELAIGLRYDF 350
            +Y+ Y+ NLLD D        ++++D +A+GL Y F
Sbjct: 346 STYVDYKINLLDEDDSFYSNNGISTDDVVALGLVYQF 382