Pairwise Alignments

Query, 350 a.a., porin from Vibrio cholerae E7946 ATCC 55056

Subject, 375 a.a., porin OmpC from Escherichia coli Nissle 1917

 Score = 87.8 bits (216), Expect = 4e-22
 Identities = 98/392 (25%), Positives = 153/392 (39%), Gaps = 68/392 (17%)

Query: 10  MNKTLIALAVSAAAVATGAYADGINQSGDKAGSTVYSAKGTSLEVGGRAEARLSLKDGKA 69
           M   +++L V A  VA  A A           + VY+  G  L++ G+ +      D K+
Sbjct: 1   MKVKVLSLLVPALLVAGAANA-----------AEVYNKDGNKLDLYGKVDGLHYFSDDKS 49

Query: 70  QDNSR--VRLNFLGKAEINDSLYGVGFYEGEFTTNDQGKNASNNSLDNRYTYAGIG-GTY 126
            D  +  +RL F G+ ++ D L G G +E +   N     + NNS   R  +AG+     
Sbjct: 50  VDGDQTYMRLGFKGETQVTDQLTGYGQWEYQIQGN--APESENNSW-TRVAFAGLKFQDI 106

Query: 127 GEVTYGKNDGALGVITDFTDIM-SYHGNTAAEKIAVADRVDNMLAYK-----GQFGDLGV 180
           G   YG+N G +  +T +TD++  + G+T      +  R +    Y+     G    L  
Sbjct: 107 GSFDYGRNYGVVYDVTSWTDVLPEFGGDTYGSDNFMQQRGNGFATYRNTDFFGLVDGLNF 166

Query: 181 KASYR-----FADRNAVDAMGNVVTETNAAKYSDNGEDGYSLSAIYTFGDTGFNVGAGYA 235
              Y+      +  N  D  G+ +T         NG DG   S  Y +   GF VGA  +
Sbjct: 167 AVQYQGQNGSVSGENDPDFTGHGITNNGRKALRQNG-DGVGGSITYDY--EGFGVGAAVS 223

Query: 236 DQD---DQNE------------YMLAASYRMENLYFAGLFTDGELAKDVDYTG------- 273
                 DQN             Y     Y   N+Y A  +T    A  V   G       
Sbjct: 224 SSKRTWDQNNTGLIGTGDRAETYTGGLKYDANNIYLAAQYTQTYNATRVGSLGWANKAQN 283

Query: 274 ------YELAAGYKLGQAAFTATYNNAETAKETSADN------FAIDATYYFKPNFRSYI 321
                 Y+   G +   A   +   N       + D+        + ATYYF  N  +Y+
Sbjct: 284 FEAVAQYQFDFGLRPSVAYLQSKGKNLGVVAGRNYDDEDILKYVDVGATYYFNKNMSTYV 343

Query: 322 SYQFNLLDSDKVGKVA---SEDELAIGLRYDF 350
            Y+ NLLD ++  + A   ++D +A+GL Y F
Sbjct: 344 DYKINLLDDNQFTRAAGINTDDIVALGLVYQF 375