Pairwise Alignments

Query, 487 a.a., serine-type D-Ala-D-Ala carboxypeptidase from Vibrio cholerae E7946 ATCC 55056

Subject, 528 a.a., Peptidase S13, D-Ala-D-Ala carboxypeptidase C (NCBI) from Rhodospirillum rubrum S1H

 Score = 59.3 bits (142), Expect = 3e-13
 Identities = 91/395 (23%), Positives = 160/395 (40%), Gaps = 44/395 (11%)

Query: 71  PASTQKILTALAAKLELGDKFRFHTDLMRSGQ--------DWIIRFSGDPTLTTADLTTL 122
           PAS  K+ T +AA   LG  +R+ T L+ +G         D  +   GDP L    L+ L
Sbjct: 87  PASVSKVPTTVAALELLGPSYRWETRLVSTGSVVDGVLKGDLYLVGGGDPVLDGRRLSAL 146

Query: 123 LKAMKAQSGGRIEGD-LWLDNSVFSGYERAVGWPWDILGVCYSAPASAINLDANCIQASI 181
           + ++       ++G  L+ D  + S  E     P D+    Y+    A+ LD N +  + 
Sbjct: 147 VDSLGTAGIRAVDGRFLYDDTLIASAPEIEPSQPADL---AYNPGFGALALDFNRVMLT- 202

Query: 182 YTEPQG----------------KTRVYVPEHYPVHVQSQAISVTQSEQESLLCDLELTAT 225
             +P+G                + RV  P+  P   ++ A+    +    +   L   A 
Sbjct: 203 -WDPKGGPRMGEVFDVPPVDSVRFRVSGPQDPPWSTKAGALRYEDTPPPVVTAGLAPMAH 261

Query: 226 PENHYTLDGCLALRDKPLPLKFA-VQDTGIYTQRVVYRLLSQLNIELKGKIKVGKANTKQ 284
           P         LA   K     +  V+  G +  +V   L  +  + L    + G A  + 
Sbjct: 262 PPQTPGESWVLAPTWKGSGSTWLPVKHPGAHVAQVARALAQRDGVTLPPP-QPGAAPPR- 319

Query: 285 AQKIASHHSQPLPVLLKTMLQESDNLIADTLTKALGHRFYSQPGSFTNGTQAIKQIFYSR 344
           A+ I    S PL  +    L+ S+NL+A+ +      R   +  + T   + +  +F + 
Sbjct: 320 ARVIGLSESPPLFEVATAALKHSNNLVAEMIGMTATRRITGRALAPTESAETLAALFRAT 379

Query: 345 T-GISLEDTQLADGSGLSRNNRMRPQVMLETLRYLYQHE-AELGLIAMLPS----AGESG 398
             G+     +LA+ SGL+ ++RM P+ M   L Y   H  + L    +LP+      +  
Sbjct: 380 LPGLDWSTFRLANHSGLTMDSRMTPEQMTAILDYAQLHAFSGLDYAGLLPTRRWGLEDDS 439

Query: 399 TLQYRRSMRAPQISGQIKAKSGSLYGTYNMAGFVM 433
            L   R  R P     + AK+G++Y    +AG+++
Sbjct: 440 DLPETRDGRLP-----VWAKTGTVYYGRGLAGYIV 469