Pairwise Alignments

Query, 487 a.a., serine-type D-Ala-D-Ala carboxypeptidase from Vibrio cholerae E7946 ATCC 55056

Subject, 543 a.a., D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase (RefSeq) from Shewanella loihica PV-4

 Score =  246 bits (629), Expect = 1e-69
 Identities = 142/400 (35%), Positives = 221/400 (55%), Gaps = 14/400 (3%)

Query: 42  PQGARYSLLIEDVALQQNTLELNTHLYYPPASTQKILTALAAKLELGDKFRFHTDLMRSG 101
           P  ++ S+  +D++  +   + N      PASTQK+LTA+AA   LG++F F T     G
Sbjct: 84  PPHSQLSIFAQDLSNNEILYQHNADTLVLPASTQKLLTAVAAMRVLGEEFSFATQFSTKG 143

Query: 102 Q--------DWIIRFSGDPTLTTADLTTLLKAMKAQSGGRIEGDLWLDNSVFSGYERAVG 153
           +        D  + FSGDPTLTT DL  +LK++K      ++G+L L         RA G
Sbjct: 144 RLSHGVLTGDLYLSFSGDPTLTTDDLRAMLKSLKDAGIHTVKGNLLLVGQA-KEQTRAPG 202

Query: 154 WPWDILGVCYSAPASAINLDANCIQASIYTE-PQGKTRVYVPEHYPVHVQSQAISVTQSE 212
           W WD LG+CY+AP S+  ++ NC++  +  +     +++  P + P+ V + A  V    
Sbjct: 203 WVWDDLGICYAAPVSSFIVNQNCVKGQLKPKLASSASQLNFPRYLPIKVSTTA--VFDKT 260

Query: 213 QESLLCDLELTATPENHYTLDGCLALRDKPLPLKFAVQDTGIYTQRVVYRLLSQLNIELK 272
           Q+   C+L L   P+NHY + GC    DKPL L  AV D  +Y + ++ R+L   +I++ 
Sbjct: 261 QQEPFCELNLARLPDNHYHISGCYP-GDKPLNLAIAVDDPALYAKEMLTRMLKSAHIKMS 319

Query: 273 GKIKVGKANTKQAQKIASHHSQPLPVLLKTMLQESDNLIADTLTKALGHRFYSQPGSFTN 332
           G++ +        + + +H S+ L  LL+TML +SDNLIAD+L KA+G  +Y    +F  
Sbjct: 320 GQVAIAHRTPIGLKPLVTHKSEGLEALLRTMLLDSDNLIADSLFKAVGAHYYKVAENFHA 379

Query: 333 GTQAIKQIFYSRTGISLEDTQLADGSGLSRNNRMRPQVMLETLRYLYQHEAELGLIAMLP 392
           G +A+K I     GI L  +Q+ DGSGLSR N +  + + E L  + + E    LI +LP
Sbjct: 380 GARAVKAIL-EADGIDLSHSQIIDGSGLSRYNLISARQLAEVLGLMAKDEKLRPLIELLP 438

Query: 393 SAGESGTLQYRRSMRAPQISGQIKAKSGSLYGTYNMAGFV 432
            AG SGTL Y+R      +  ++ AK+GS+ G  N+AG++
Sbjct: 439 VAGVSGTLNYKRGFHQAPLMNKVSAKTGSMQGVDNLAGYL 478