Pairwise Alignments

Query, 487 a.a., serine-type D-Ala-D-Ala carboxypeptidase from Vibrio cholerae E7946 ATCC 55056

Subject, 507 a.a., penicillin-binding protein 4 (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  237 bits (605), Expect = 6e-67
 Identities = 153/407 (37%), Positives = 217/407 (53%), Gaps = 16/407 (3%)

Query: 42  PQGARYSLLIEDVALQQNTLELNTHLYYPPASTQKILTALAAKLELGDKFRFHTDL---- 97
           P  ++ +LL  D++  +          + PASTQK+LTA+ A   LG +F + TDL    
Sbjct: 51  PSHSQIALLAHDMSNDKQLYSQQADTLFIPASTQKVLTAVTALAALGPEFSYVTDLWSDA 110

Query: 98  -MRSGQ---DWIIRFSGDPTLTTADLTTLLKAMKAQSGGRIEGDLWLDNSVFSGYERAVG 153
            +R G       +RFSGDPTLT  DL  L   ++     RIEG L+L        + A G
Sbjct: 111 PIRQGHVEGSVYLRFSGDPTLTHEDLKALFAQLQKLGIKRIEGHLYLVGDKQEQLQ-APG 169

Query: 154 WPWDILGVCYSAPASAINLDANCIQASIYTEPQGKT-RVYVPEH-YPVHVQSQAISVTQS 211
           W WD LG+C++AP S+  ++ NC+          +T RV +  + Y V+V S AI   Q+
Sbjct: 170 WVWDDLGICFAAPVSSYIINQNCVYGQFVPSSAKQTSRVTLSANSYGVNVSSDAIFSPQA 229

Query: 212 EQESLLCDLELTATPENHYTLDGCLALRDKPLPLKFAVQDTGIYTQRVVYRLLSQLNIEL 271
             +   C L+L    +N Y L GC     + +PL  A+ D   +    +   L    I L
Sbjct: 230 NHD--FCQLDLVRLSQNQYHLRGCYP-GSEAIPLAIAISDPQKFAIDTLTATLKG-KISL 285

Query: 272 KGKIKVGKANTKQAQKIASHHSQPLPVLLKTMLQESDNLIADTLTKALGHRFYSQPGSFT 331
            GK+K+G     +A+ IASH S PLP LLKTML +SDNLIAD+L K +G  +Y   GSFT
Sbjct: 286 SGKVKIGHDIPDKAKLIASHRSAPLPELLKTMLLKSDNLIADSLFKRVGQDYYKTQGSFT 345

Query: 332 NGTQAIKQIFYSRTGISLEDTQLADGSGLSRNNRMRPQVMLETLRYLYQHEAELGLIAML 391
            G  A++ I  +  GI L +  + DGSGLSR N +  + + + L  +YQ      LI  L
Sbjct: 346 YGAAAMRHIL-TELGIDLTNANIVDGSGLSRYNLLSAKQLADVLTLMYQDARFHSLIDSL 404

Query: 392 PSAGESGTLQYRRSMRAPQISGQIKAKSGSLYGTYNMAGFVMDENQR 438
           P AG SGTL+YR+    P +  ++ AK+GS+ G  N+AGF+    QR
Sbjct: 405 PEAGVSGTLKYRQGYTQPPLKNRVFAKTGSMQGVANLAGFIRIPQQR 451