Pairwise Alignments

Query, 487 a.a., serine-type D-Ala-D-Ala carboxypeptidase from Vibrio cholerae E7946 ATCC 55056

Subject, 468 a.a., penicillin-binding protein, D-alanyl-D-alanine carboxypeptidase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 71.2 bits (173), Expect = 7e-17
 Identities = 97/447 (21%), Positives = 190/447 (42%), Gaps = 46/447 (10%)

Query: 17  LSISGFLIASPIYAQTPLTAATT----KLPQGARYSLLIEDVALQQNTLELNTHLYYPPA 72
           L +S  L+ + ++ Q  L+   +     LP+ +   + + D+  +++           PA
Sbjct: 8   LVLSVALLPTSVWGQANLSQIDSLIKRMLPEASEVGISVYDLTAKKSLYTYRDTKLSRPA 67

Query: 73  STQKILTALAAKLELGDKFRFHTDLMRSG-------QDWIIRFSG-DPTLTTADLTTLLK 124
           ST K+LTA+ A         F T++   G       Q  +    G DP   +  + +L++
Sbjct: 68  STMKLLTAITALSRPDADNPFRTEVWHDGVIEHDTLQGNLYVVGGFDPEFDSLMMDSLIE 127

Query: 125 AMK----AQSGGRIEGDLWLDNSVFSGYERAVGWPWDILGVCYSAPASAINLDANCIQAS 180
            +     +   G++ GD+ + +S++ G+    GW WD     Y    S +      ++ +
Sbjct: 128 EVITFPFSVINGQVYGDVSMKDSLYWGH----GWAWDDTPEAYQPYMSPLMFCKGAVEVT 183

Query: 181 IYTEP-QGKTRVY----VPEHYPVHVQSQAISVTQSEQESLLCDLELTATPENHYTLDGC 235
           +     QG T       V  +Y +  +++  + +  +  SL  D     T  N+  + G 
Sbjct: 184 VVPGSLQGDTASVSCKPVSSYYTLTNRTKTRTPSAGKY-SLSRDW---LTNGNNLIVTGN 239

Query: 236 LALRDKPLPLKFAVQDTGIYTQRVVYRLLSQLNIELKGKIKVGKANTKQAQKIASHHSQP 295
           +    K L     V D+G +        L    I +       +  +  A+++A   + P
Sbjct: 240 VPTFRKDL---INVYDSGSFFMHAFLERLRAKGIVVPESYGFTELPSDGAEQMARWET-P 295

Query: 296 LPVLLKTMLQESDNLIADTL-----TKALGHRFYSQPGSFTNGTQAIKQIFYSRTGISLE 350
           +  +L  +++ESDNL A+ +     ++A G +  +         + ++ +     G   +
Sbjct: 296 VQKVLNQLMKESDNLNAEAMLCRIASQATGKKRVTAEDGIVEIMKLVRNL-----GHDPK 350

Query: 351 DTQLADGSGLSRNNRMRPQVMLETLRYLY-QHEAELGLIAMLPSAGESGTLQYRRSMRAP 409
           D ++ADG GLS  N + P ++++ L+Y Y Q +    L   LP AG  GTL+ R  M+  
Sbjct: 351 DYKIADGCGLSNYNYLSPALLVDFLKYAYSQSDVFQKLYKSLPVAGIDGTLKNR--MKNT 408

Query: 410 QISGQIKAKSGSLYGTYNMAGFVMDEN 436
                + AK+GS      +AG++  +N
Sbjct: 409 PAFRNVHAKTGSFTAINALAGYLKMKN 435