Pairwise Alignments

Query, 487 a.a., serine-type D-Ala-D-Ala carboxypeptidase from Vibrio cholerae E7946 ATCC 55056

Subject, 513 a.a., D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase (RefSeq) from Shewanella sp. ANA-3

 Score =  232 bits (591), Expect = 3e-65
 Identities = 155/403 (38%), Positives = 213/403 (52%), Gaps = 25/403 (6%)

Query: 54  VALQQNTLELNTHLY-------YPPASTQKILTALAAKLELGDKFRFHTDL-----MRSG 101
           VAL    L  NT LY       + PASTQK+LTA+ A   LG  FR+ T+L     +R G
Sbjct: 62  VALLARDLSTNTLLYSQQADTLFIPASTQKVLTAVTALATLGPDFRYVTELWSDAPIRQG 121

Query: 102 Q---DWIIRFSGDPTLTTADLTTLLKAMKAQSGGRIEGDLWLDNSVFSGYERAVGWPWDI 158
                  +RFSGDPTLT  DL  L   ++ Q    IEG L+L        + A GW WD 
Sbjct: 122 HIAGSVYLRFSGDPTLTQDDLKALFAHLQKQGITSIEGHLYLIGDKQEQLQ-APGWVWDD 180

Query: 159 LGVCYSAPASAINLDANCIQASIYTEPQGKTRVYVP---EHYPVHVQSQAISVTQSEQES 215
           LG+C++AP S+  ++ NC+    +     K    V      + V V S AI   ++  + 
Sbjct: 181 LGICFAAPVSSYIINQNCVYGQ-FAPSSAKHASEVKLRASSFGVKVSSDAIFSPKAGHD- 238

Query: 216 LLCDLELTATPENHYTLDGCLALRDKPLPLKFAVQDTGIYTQRVVYRLLSQLNIELKGKI 275
             C L+L    +N Y L GC    ++ +PL  A+ D   +    +   L    + L GK+
Sbjct: 239 -FCQLDLVRLGQNQYHLRGCYP-GNEAIPLAIAISDPEKFAMDTLTATLKG-EMSLSGKV 295

Query: 276 KVGKANTKQAQKIASHHSQPLPVLLKTMLQESDNLIADTLTKALGHRFYSQPGSFTNGTQ 335
           K+G A   +A+ IASH S PLP LLKTML +SDNLIAD+L K +G  +Y   GSFT+G  
Sbjct: 296 KIGNAIPSKAKLIASHSSAPLPELLKTMLLKSDNLIADSLFKRVGQSYYKAQGSFTHGAA 355

Query: 336 AIKQIFYSRTGISLEDTQLADGSGLSRNNRMRPQVMLETLRYLYQHEAELGLIAMLPSAG 395
           A++ I  +  GI L +  + DGSGLSR N +  + + + L  +YQ      LI  LP AG
Sbjct: 356 AMRHIL-TELGIDLTNANIVDGSGLSRYNLLSAKQLADVLALIYQDARFHSLIDSLPEAG 414

Query: 396 ESGTLQYRRSMRAPQISGQIKAKSGSLYGTYNMAGFVMDENQR 438
            SGTLQYR     P +  ++ AK+GS+ G  N+AGF+    QR
Sbjct: 415 VSGTLQYRLGYTKPPLKHRVFAKTGSMQGVANLAGFMRLAQQR 457