Pairwise Alignments

Query, 1039 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1015 a.a., RND efflux transporter from Pseudomonas fluorescens FW300-N2E2

 Score =  281 bits (718), Expect = 2e-79
 Identities = 248/1051 (23%), Positives = 467/1051 (44%), Gaps = 87/1051 (8%)

Query: 2    FTLIDAALSRTRTMLTLLVFILVAGVATYLTIPKESSPDVTIPIIYVSVSHQGISPSDAE 61
            F L + AL     +  L+   L+ GV +Y+ + +E  P  TI  + +     G +  +  
Sbjct: 5    FNLSEWALRHQSFVWYLMFVALLMGVFSYMNLGREEDPSFTIKTMVIQTRWPGATQEETL 64

Query: 62   RLIVRPLEQEMRSIEGVKEMTATASEGHASV---VLEFNVGVDLAKAMADVRDAVDLAKP 118
            R +   +E+++  ++ +  + +    G ++V   +L+     ++ +    VR  ++  + 
Sbjct: 65   RQVTDRIEKKLEELDSLDYVKSYTRPGESTVFVYLLDTTAAKEIPEIWYQVRKKINDIRG 124

Query: 119  KLPADSDEPTVNEVTLAAEQPVLSVVLYGTVPERT-TVLIARQLRDKLESFRQIL----- 172
              P     P  N+             +YG+V   T   L  RQLRD +E  R  +     
Sbjct: 125  DFPDGLQGPGFNDEFGD---------VYGSVYAFTGDGLSMRQLRDYVEQVRAEIHDVPG 175

Query: 173  --SVDIAGDREEIVEIIVDPLLMESYGLDQSDIYNLIALNNRVVAAGFVDTGYGRFSVKV 230
               V++ G+++E++ +      + + G+DQ ++   +   N V  AG +D G  R SV+ 
Sbjct: 176  LGKVEMVGEQDEVLYLNFSTRKLAALGIDQREVVQSLQTQNAVTPAGVIDAGPERISVRT 235

Query: 231  PSVFESLKDVLELPIKVEGKQVITFGDVATVRKSFRDPES-FARLDGKPAIVLDIKKRSG 289
               F+S KD+  + +++  +      D+A + + + DP +   R +G PAI L I  + G
Sbjct: 236  SGQFQSEKDLANVNLRLNDR-FYRLADIADISRGYVDPATPMFRFNGTPAIGLAIAMKKG 294

Query: 290  ENIIETVELVKAVLGEAQARDDWPNNLLVKTIWDESEDVKLMLNDLQNNILSAIILVVVV 349
             NI +  + + A + E  A  D P  + V T+ D++E V+  +    + +  A+I+V+VV
Sbjct: 295  GNIQDFGKALHARMSELTA--DLPVGVGVHTVSDQAEVVEEAVGGFTSALFEAVIIVLVV 352

Query: 350  IIAILGVRTSLLVGVSIPGSFLTGLLVLAVFGLTVNIVVLFALIMAVGMLVDGAIVVTEF 409
                LGVR  L+V  SIP       L +   G+T+  + L ALI+A+G+LVD A++  E 
Sbjct: 353  SFVSLGVRAGLVVACSIPLVLAMVFLFMEYSGITMQRISLGALIIALGLLVDDAMITVEM 412

Query: 410  ADRRMQEGMHRSEAYRDAAKRMAWPITASTATTLAAFAPLLFWPDVTGEFMKYLPLTLMA 469
               R+++G  + +A   A    A+P+   T  T+A F P+       GE+   L   +  
Sbjct: 413  MVTRLEKGDSKDQAATFAYTSTAFPMLTGTLVTVAGFVPIGLNASSAGEYTFTLFAVIAV 472

Query: 470  TLTASLVMALLFVPVLG-SLFGRPQKVTQANQARMVALHNGDFSQATGITKAYYSTLAIA 528
             +  S ++A+LF PV+G  +     K   A   R+    NG    A  +   +++     
Sbjct: 473  AMLVSWIVAVLFAPVIGVHILSTNVKPHSAEPGRIGRAFNGGLLWA--MRNRWWAIGITV 530

Query: 529  IRHPIKILCGALLMSAAIAFAYGKAGLGAEFFPEVDPPFFSVKVRSYGDLSLNEKDRIMS 588
            +   + + C   + +              +FFP  D P   V +    + S++E  R + 
Sbjct: 531  LLFVLSVFCMRFVQN--------------QFFPSSDRPEILVDLNLPQNASMDETRRAVD 576

Query: 589  DIEQVMLGHDEFESVYTRTGGDDEIGVVQITPVDWQYR--------------RSVKAIIE 634
             +E  + G  + E   T  G   E  +    P+D Q +               S  A+ E
Sbjct: 577  RLEATLKGDPDIERWSTYIG---EGAIRFYLPLDQQLQNPYYAQLVIVSKGLESRTALTE 633

Query: 635  ELE-QVTDTFPGVEIEYKFPDAGPPVEHDLEIEISARVADDLDKAAQQVRLWAEANPALT 693
             L+ ++ + F G+    +  + GPPV   ++  +S +  D + K A ++    + N  + 
Sbjct: 634  RLQKRLREDFVGIGSYVQALEMGPPVGRPIQYRVSGKDIDQVRKHAIELATELDKNSHIG 693

Query: 694  NLSDNGSKPGIDWKIDIRRDDASRFAADATLVGNTVQFVTNGLKIGDYLPDDSDEEVDIL 753
             +  + ++PG   +IDI +D A +    +  V   +  + +G  +     +D    +D++
Sbjct: 694  EIIYDWNEPGKVLRIDIAQDKARQLGLSSDDVARLMNSIVSGSPVTQV--NDDIYLIDVV 751

Query: 754  VRYPSEYRDIGR-FDQLRVKTAQGL-VPLTNFAQIIPEQKQDTIHRVDGRRVISVMADLK 811
             R     R        L++ T  G  +PL  FA +  E +Q  + R D +  I++ A ++
Sbjct: 752  GRAEDAERGSPETLQNLQIVTPGGTSIPLLAFATVRYELEQPLVWRRDRKPTITIKAAVR 811

Query: 812  EGY---NLALEL-PAIEQALRELNLPSSVEFRIRGQNEEQEHSAVFLEKAFMVALAAMAI 867
            +     +L  +L PAI++      LP   +    G  EE   +   +     + L  MA 
Sbjct: 812  DEIQPTDLVKQLQPAIDKF--AAGLPVGYKVATGGTVEESSKAQGPIASVVPLMLFLMAT 869

Query: 868  ILITQFNSFYQAFLILTAVIFSTVGVFAGLLIFQKPFGIIMSGIGVIALAGIVVNNNIVL 927
             L+ Q +S  + FL+ +      +GV   L+    P G + + +G++AL GI++ N+++L
Sbjct: 870  FLMIQLHSVQKLFLVASVAPLGLIGVVLALVPTGTPMGFV-AILGILALIGIIIRNSVIL 928

Query: 928  IDTYNQLLKRGLSREEAILRTGVQRLRPVLLTTVTTILGLLPMVLEMNIDIINQKIEFGA 987
            +   ++  + G    +A++     R RP+LLT     LG++P+  E+             
Sbjct: 929  VTQIDEYERDGYEPWDAVVEATEHRRRPILLTAAAASLGMIPIAREV------------- 975

Query: 988  PSTQWWSQLATAVAGGLAFATVLTLVLTPCL 1018
                +W  +A A+ GG+  AT+LTL+  P L
Sbjct: 976  ----FWGPMAYAMIGGIIIATLLTLLFLPAL 1002