Pairwise Alignments

Query, 1039 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1014 a.a., Cation/multidrug efflux pump from Pseudomonas stutzeri RCH2

 Score =  287 bits (734), Expect = 3e-81
 Identities = 252/1039 (24%), Positives = 467/1039 (44%), Gaps = 66/1039 (6%)

Query: 8    ALSRTRTMLTLLVFILVAGVATYLTIPKESSPDVTIPIIYVSVSHQGISPSDAERLIVRP 67
            +++R   +  L++  L  G+  +  I +   P+ TI    V+V + G +  + E+ +  P
Sbjct: 7    SITRPVNIWILVLICLFGGILAFFEIGRLEDPEFTIKQAIVNVQYPGATALEVEQQVTEP 66

Query: 68   LEQEMRSIEGVKEMTATASEGHASVVLEFN---VGVDLAKAMADVRDAVDLAKPKLPADS 124
            LE  ++ +  +KE+ + +  G A + +E      G  L +   ++R+ ++ A+  LP   
Sbjct: 67   LESAIQQMSQIKEIRSRSMPGIAEIRVEMQDRYAGDALPQIWDELRNKINDAQGDLPPGI 126

Query: 125  DEPTVNEVTLAAEQPVLSVVLYGTVPERTTVL----IARQLRDKLESFRQILSVDIAGDR 180
            + P VN+     +   +  + Y    +  T+      A+ LR  L +   +  V+IAG +
Sbjct: 127  EPPQVND-----DFGDVYGIFYALTGDGLTLKELHETAKDLRRALLTADGVGKVEIAGVQ 181

Query: 181  EEIVEIIVDPLLMESYGLDQSDIYNLIALNNRVVAAGFVDTGYGRFSVKVPSVFESLKDV 240
            EE + + VD   + + G+   +I   +A  +  V AG V+ G     ++    F+SL+++
Sbjct: 182  EERILVEVDQAQLAALGVAPDEIAAALADTDAAVDAGGVNAGEFFVRLRPSGAFDSLEEL 241

Query: 241  LELPIKVEGKQVITFGDVATVRKSFRD-PESFARLDGKPAIVLDIKKRSGENIIETVELV 299
              LP+  +G Q +  G +A + + + + P+   R +G+ A+ L I   SG NI+E    V
Sbjct: 242  RALPVG-QGPQRVELGAIARLSREYAERPQQIIRHNGQQALTLGISGVSGANIVEVGHSV 300

Query: 300  KAVLGEAQARDDWPNNLLVKTIWDESEDVKLMLNDLQNNILSAIILVVVVIIAILGVRTS 359
            +AVL   + R   P    +  ++++ + V   +N    N+  ++ +VV V+   +G+R  
Sbjct: 301  EAVLQANEHR--MPLGADLHPLYEQHQIVDESVNSFALNVFLSVAIVVGVLCIAMGLRAG 358

Query: 360  LLVGVSIPGSFLTGLLVLAVFGLTVNIVVLFALIMAVGMLVDGAIVVTEFADRRMQEGMH 419
             ++G  +  + L  LLV+ + G+ +  + L ALI+A+GMLVD A+VV +    R ++G  
Sbjct: 359  FIIGAVLFLTVLGTLLVMWLVGIELERISLGALIIAMGMLVDNAVVVCDGMLVRQRQGKS 418

Query: 420  RSEAYRDAAKRMAWPITASTATTLAAFAPLLFWPDVTGEFMKYLPLTLMATLTASLVMAL 479
              EA +   ++  WP+  +T   + AFA +    D TGE +  L   +  +L  S ++AL
Sbjct: 419  ILEASQQTLRQTQWPLLGATIIGILAFAGIGLSQDTTGELLFSLFFVIAVSLLLSWLLAL 478

Query: 480  LFVPVLGSLFGRPQKVTQANQARMVALHNGDFSQATGITKAYYSTLAIAIRHPIKILCGA 539
            L VP+ G    R     +       A +NG +          Y  LA  + H   +  G 
Sbjct: 479  LLVPLFGHYLLRNADTDEDPD----AAYNGPWYNR-------YRRLAGGVLHRPWLTIGV 527

Query: 540  LLMSAAIAFAYGKAGLGAEFFPEVDPPFFSVKVRSYGDLSLNEKDRIMSDIEQVMLGHDE 599
            LL+   ++ A     L   FFP    P F V +       + +  R  SD+E+ +   + 
Sbjct: 528  LLVLTVVS-AVIFTRLPQSFFPPSSTPLFYVNLFLPQGTHIRDTARTASDVEEYLAEMEG 586

Query: 600  FESVYTRTGGDDEIGVVQITP-------VDWQYRRSVKAIIEEL-----EQVTDTFPGVE 647
               V +  G      ++   P       + +  R     +I+ L     +++   +P  +
Sbjct: 587  VSGVSSFIGAGASRFMLTYMPEQPNSSLMHFLVRTEDAELIDRLVRQINQELPQRYPSAD 646

Query: 648  IEYKFPDAGPPVEHDLEIEISARVADDLDKAAQQVRLWAEANPALTNLSDNGSKPGIDWK 707
            +       GP  E  LE  IS    + L   + + R   +    + N+ D+  +P +  +
Sbjct: 647  VTAAQFMFGPNAEAKLEARISGPDIEVLRAISAEGRKRLQDEGKVFNVRDDWRQPVLVLR 706

Query: 708  IDIRRDDASRFAADATLVGNTVQFVTNGLKIGDYLPDDSDEEVDILVRYPSEYRDIGRFD 767
              +  D  +        V   +   + G ++   L  + DE + +L+R   E R +   D
Sbjct: 707  PQLALDRLADAGLTRQAVARALAAGSEGQRVS--LLRERDELIPVLLRAAPEDR-VSSDD 763

Query: 768  QLR----VKTAQGLVPLTNFAQ-IIPEQKQDTIHRVDGRRVISVMADLKEGYNLALELPA 822
             L+         G VPL   A  I P  +   I R D  R IS+ A+ ++G N       
Sbjct: 764  LLQRLIWSPAGNGYVPLAQVADGIEPTSEDSIIVRYDRERTISIRAEPRDGENTNEAHQR 823

Query: 823  IEQALRELNLPSSVEFRIRGQNEEQEHSAVFLEKAFMVALAAMAIILITQFNSFYQAFLI 882
            I   +  + LP +   +  G  E+   +   L     V   AM ++ +  F    Q  +I
Sbjct: 824  IRPLIEGIELPVNYSLKWGGDYEQSSDAQQALASTLAVPYLAMVLVTVLLFARVRQPLMI 883

Query: 883  LTAVIFSTVGVFAGLLIFQKPFGIIMSGIGVIALAGIVVNNNIVLIDTYNQLLKRGLSRE 942
               V  +  GV  GLL+  + FG  M+ +G+++L G+++ N +VL+D  ++ +   + R 
Sbjct: 884  WLVVPMAICGVSFGLLLTGQAFG-FMALLGLLSLTGMLIKNAVVLVDEIDRQIDDEVPRL 942

Query: 943  EAILRTGVQRLRPVLLTTVTTILGLLPMVLEMNIDIINQKIEFGAPSTQWWSQLATAVAG 1002
             AI+     RLRPV++   TT+LG++P++ +                  +++ +A  + G
Sbjct: 943  TAIIEASASRLRPVMMAAGTTVLGMVPLLFD-----------------PFFANMAVTIMG 985

Query: 1003 GLAFATVLTLVLTPCLLML 1021
            GL FAT+LTL+  PCL +L
Sbjct: 986  GLGFATLLTLLAVPCLYLL 1004