Pairwise Alignments

Query, 1039 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1049 a.a., efflux protein from Sinorhizobium meliloti 1021

 Score =  300 bits (767), Expect = 5e-85
 Identities = 265/1064 (24%), Positives = 478/1064 (44%), Gaps = 68/1064 (6%)

Query: 2    FTLIDAALSRTRTMLTLLVFILVAGVATYLTIPKESSPDVTIPIIYVSVSHQGISPSDAE 61
            F L   A+        LL  I++ G    L + +   P+ T  ++ V     G S  + E
Sbjct: 11   FNLSRWAIGHPSIARFLLALIIITGGLGLLRMGQREDPEFTFRVMVVQAVWPGASIQEME 70

Query: 62   RLIVRPLEQEMRSIEGVKEMTATASEGHA--SVVLEFNVGVD-LAKAMADVRDAVDLAKP 118
              +V  +E++++    +  + +    G A  +V +E +   D +A A   VR  V     
Sbjct: 71   DQVVNKIERKLQETPHLDFVRSYTRAGSAIITVQIEGDTNADEVADAFYQVRKKVGDIAN 130

Query: 119  KLPADSDEPTVNEVTLAAEQPVLSVVLYG-TVPERTTVLIARQLRDKLESFRQILSVDIA 177
            +LP     P  N+        + S+   G + PE     I  + RD L +   +  V + 
Sbjct: 131  ELPEGVLGPYFNDEFGDTFITLHSISGDGFSYPELKRFAI--EGRDMLLATPGVEKVVVL 188

Query: 178  GDREEIVEIIVDPLLMESYGLDQSDIYNLIALNNRVVAAGFVDTGYGRFSVKVPSVFESL 237
            GD+ E + I +   ++   GL  +D+ N IA  N V  AG VDTG     + V      +
Sbjct: 189  GDQPEKIYIDLSSKVLAERGLTFNDLRNAIAGQNNVDYAGSVDTGTRSVRISVEGDVTKV 248

Query: 238  KDVLELPIKVEGKQVITFGDVATVRKSFRDPESFA-RLDGKPAIVLDIKKRSGENIIETV 296
            +D+ EL ++  G + I  GD+ATV     DP +   R +G  ++ + +    G N+ +  
Sbjct: 249  EDIRELRLRA-GDRTIRLGDIATVTSGLEDPYARKFRFNGHDSVQIGVVMAKGFNVTDVG 307

Query: 297  ELVKAVLGEAQARDDWPNNLLVKTIWDESEDVKLMLNDLQNNILSAIILVVVVIIAILGV 356
            + V+A     ++    P  + V  + ++ E V   + +  + ++ A+I+V++V    +G 
Sbjct: 308  KAVEATYDRFESA--LPYGVSVDQVSNQPEVVTEAITEFSHALIEALIIVLIVSFLSIGW 365

Query: 357  RTSLLVGVSIPGSFLTGLLVLAVFGLTVNIVVLFALIMAVGMLVDGAIVVTEFADRRMQE 416
            R+ L++ ++IP        ++   G+ +  + L ALI+A+G+LVD A++V E  +R+++E
Sbjct: 366  RSGLVIAIAIPLVLAATFAIMYELGIDLQRISLGALIIALGLLVDDAMIVVEMMERKLEE 425

Query: 417  GMHRSEAYRDAAKRMAWPITASTATTLAAFAPLLFWPDVTGEFMKYLPLTLMATLTASLV 476
            G+ + +A   A    A+P+   T  T A F P+ F     GE+++ L   +   L  S  
Sbjct: 426  GLEKIDAASFAYSSTAFPMLTGTLITTAGFIPVGFAESTAGEYVRSLFYVVGIALVVSWF 485

Query: 477  MALLFVPVLGSLFGRPQKVTQANQARMVALHNGDFSQATGITKAYYSTLAIAIRHPIKIL 536
            +A+ F P LG +           Q      H+  F   T   +   +T+  A+RH + +L
Sbjct: 486  VAVYFTPWLGYMI--------LKQRHHAGTHHDVFD--TRFYRRLRTTVGWAVRHRVVVL 535

Query: 537  CGALLMSAAIAFAYGKAGLGAEFFPEVDPPFFSVKVRSYGDLSLNEKDRIMSDIEQVMLG 596
               L +     +A+    +   FFP+   P   V +      S+ E ++    +E+ M+ 
Sbjct: 536  LMTLAIFVTSLWAF--QFIPKNFFPQSSRPEILVDLWLPEGTSIKEVEKQAKALEERMMD 593

Query: 597  HDEFESVYTRTGGDDEIGVVQITPVDWQYRR--------------SVKAIIEELEQV-TD 641
             ++   + T  G   E       P+D Q R               + + +I +L  +  +
Sbjct: 594  DEDKRFIATYIG---EGAPRFFLPLDQQLRNPNFAQLLVMAKDEPARERLIAKLRTILAE 650

Query: 642  TFPGVEIEYKFPDAGPPVEHDLEIEISARVADDLDKAAQQVRLWAEANPALTNLSDNGSK 701
             FP +  +      GPP    +++ +     +++ + A QV+   + NP L  + D+  +
Sbjct: 651  DFPSIRAKVDRLFLGPPTGWPVQMRVMGPDREEVRRIADQVKTKFQENPMLGAIHDDWLE 710

Query: 702  PGIDWKIDIRRDDASRFAADATLVGNTVQFVTNGLKIGDYLPDDSDEEVDILVRYPSEYR 761
            P    K+ I +D A      +  +   +Q   +G+ +  +   D +E V I+ R P   R
Sbjct: 711  PVPAMKLVIDQDRARALGITSQRIRQMLQAAMSGVPLDSF--RDGEETVSIMAREPGGNR 768

Query: 762  D-IGRFDQLRVKT-AQGLVPLTNFAQIIPEQKQDTIHRVDGRRVISVMADLKEGY---NL 816
              +     + V T   G VP++  A+++P  +Q    R D    I+V   L +G    ++
Sbjct: 769  HLLSAVQSVYVPTDFGGFVPVSQIAKVVPVMEQGIEWRRDRLPTITVRGTLPDGVQPNDV 828

Query: 817  ALELPAIEQALRELNLPSSVEFRIRGQNEEQEHSAVFLEKAFMVALAAMAIILITQFNSF 876
            A++L    + LR+  L    +  I+G  E+   S   +     + L  + I+L+ Q   F
Sbjct: 829  AMQLFDELKGLRD-GLAPGYKVEIQGGAEDSAESQASIAAKAPIMLVVIVILLMVQLQHF 887

Query: 877  YQAFLILTAVIFSTVGVFAGLLIFQKPFGIIMSGIGVIALAGIVVNNNIVLIDTYNQLLK 936
             +A L+L       +G  A LLI   PFG + + +GVIAL GI++ N+I+L+D  +Q + 
Sbjct: 888  GKAMLVLATGPLGIIGAAAALLISGAPFGFV-AILGVIALLGIIIRNSIILVDQIDQDIA 946

Query: 937  RGLSREEAILRTGVQRLRPVLLTTVTTILGLLPMVLEMNIDIINQKIEFGAPSTQWWSQL 996
             G+ R EAI+   V+R RP++LT +T +L L+P+   +                 +W  L
Sbjct: 947  AGMERSEAIIGAAVRRFRPIILTALTAVLALIPISRGV-----------------FWGPL 989

Query: 997  ATAVAGGLAFATVLTLVLTPC--LLMLGRRRKGVSEDEAPQDAQ 1038
            A A+ GG+  ATVLT+++ P    L  G+  K    D  P  AQ
Sbjct: 990  AYAMMGGILVATVLTILVLPAGYALFFGKEPKSRKTDPEPLAAQ 1033