Pairwise Alignments

Query, 1039 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1067 a.a., AcrB/AcrD/AcrF family protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  294 bits (753), Expect = 2e-83
 Identities = 255/1038 (24%), Positives = 482/1038 (46%), Gaps = 74/1038 (7%)

Query: 18   LLVFILVAGVATYLTIPKESSPDVTIPIIYVSVSHQGISPSDAERLIVRPLEQEMRSIEG 77
            L++ +LV G+ +   I KE  P   + ++ +SV++ G +P + E  I   +E+ ++ + G
Sbjct: 21   LMIVLLVGGLFSTQLINKEIFPSFELNLLRISVAYPGAAPQEIEEGINIKIEEAIQDVIG 80

Query: 78   VKEMTATASEGHASVVLEFNVGVDLAKAMADVRDAVDLAKPKLPADSDEPTVNEVTLAAE 137
            +K++T+ AS+G  S+ +E   GVD    + + +  +D A    PA+ ++P + ++    E
Sbjct: 81   IKKLTSVASDGVGSITIEVENGVDAKTVLDEAKLRID-AISTFPANIEKPNIYQIK--PE 137

Query: 138  QPVLSVVLYGTVPERTTVLIARQLRDKLESFRQILSVDIAGDREEIVEIIVDPLLMESYG 197
              V+ + +YG +       +A+ +RD++ +   +    +AG R   + I V    +  YG
Sbjct: 138  NNVIWLSVYGDINAHEMKELAKNIRDEVAALPSVTRAQVAGARNYEIGIEVSENKLREYG 197

Query: 198  LDQSDIYNLIALNNRVVAAGFVDTGYGRFSVKVPSVFESLKDVLELPIKV--EGKQVITF 255
            L  + +   +  ++  +  G +    G   ++      + +D   + +    +G +++  
Sbjct: 198  LTFTQVAMAVQNSSLDLPGGAIRAKDGDILLRTKGQAYTGEDFSSIVVATSKDGSRIM-L 256

Query: 256  GDVATVRKSFRDPESFARLDGKPAIVLDIKKRSGENIIETVELVKAVLGEAQARDDWPNN 315
             DVAT++  F +   + R +GKPA+++++     ++ +   + VK  + E +     P  
Sbjct: 257  PDVATIKDDFEERLDYTRFNGKPAVIVEVLSVKDQDAVAIAKDVKDYIAERKL--SLPAG 314

Query: 316  LLVKTIWDESEDVKLMLNDLQNNILSAIILVVVVIIAILGVRTSLLVGVSIPGSFLTGLL 375
              +    D +  +   LN + +N+    +LV V++   L ++ +  V V IP  FL  LL
Sbjct: 315  AELDYWGDLTHYLNGRLNMMLSNMTMGALLVFVILALFLDLKLAFWVMVGIPVCFLGTLL 374

Query: 376  VLAV--FGLTVNIVVLFALIMAVGMLVDGAIVVTEFADRRMQEGMHRSEAYRDAAKRMAW 433
            ++ V  F L++N++ LFA I+ +G+LVD AIV+ E     ++   H  +     A+++A 
Sbjct: 375  LMPVEPFALSINMLTLFAFILVLGILVDDAIVIGESVHTEVERHGHNMDNVIRGAQKVAM 434

Query: 434  PITASTATTLAAFAPLLFWPDVTGEFMKYLPLTLMATLTASLVMALLFVPVLGSLFGRPQ 493
            P T    TT+AAF P+L      G   K + + ++  L  SLV + L +P   +      
Sbjct: 435  PATFGVLTTIAAFIPMLMVDGPMGIIWKSIGMVVILCLAFSLVESKLILPAHLAHMKPNT 494

Query: 494  KVTQANQARMVALHNGDFSQATGITKAYYSTLAIAIRHPIKILC---GALLMSAAIAFAY 550
            K       RM    N     A  I  +Y + L  AI +    L    G L++S A+  A 
Sbjct: 495  KEPSGPLGRMKLRFNE--RVAHFIHHSYKAFLERAIHNRYNWLAGFTGVLILSIALV-AS 551

Query: 551  GKAGLGAEFFPEVDPPFFSVKVRSYGDLSLNEKDRIMSDIEQVMLG-HDEFESVYTRTGG 609
            GK  +   FFP +   F  V ++     S +   + +  IE  +   + E E  Y     
Sbjct: 552  GK--VRWVFFPSIPSDFVQVNLQMEEGSSEDNTLKALQQIEDALYRMNGEMEQKYGEP-- 607

Query: 610  DDEIGVVQITPVDWQYRRSVKAIIEELEQVTDTFPGVEIEYKFPDAGPPV---------- 659
                 VV+ +  +   R S     E  +       G  I   + DA P +          
Sbjct: 608  -----VVKHSFFNMNSRTSAFIFAELTKGEDRELDGNAITDAWRDALPEMVGVKKLSMNA 662

Query: 660  -----EHDLEIEISARVADDLDKAAQQVRLWAEANPALTNLSDNGSKPGIDWKIDIRRDD 714
                   D+   +S+   + L  AA++++    +   L +++DN S    + ++ IR   
Sbjct: 663  TTNDAGGDVAFRLSSNDLEQLSLAAKELKTKLASYEGLYDIADNYSSGSHEIRLKIR--- 719

Query: 715  ASRFAADATLVGNTVQFVTNGLKIGDYLPD-----DSDEEVDILVRYPSEY-RDIGRFDQ 768
                  +A  +G T+  +   ++ G Y  +      + EEV ++VRYP E  R +G  + 
Sbjct: 720  -----PEAEALGLTLSDLARQVRYGFYGYEAQRILRNKEEVKVMVRYPLEQRRTVGHLEN 774

Query: 769  LRVKTAQG-LVPLTNFAQIIPEQKQDTIHRVDGRRVISVMA----DLKEGYNLALELPAI 823
            + ++T  G  VP  N A+I        I RVDGRR I++ A    D  E   +  E+   
Sbjct: 775  MLIRTPDGSAVPFANVAEIEVGDSYSAITRVDGRRAITITAAANKDKVEPGKVVAEIQKD 834

Query: 824  EQALRELNLPSSVEFRIRGQNEEQEHSAVFLEKAFMVALAAMAIILITQFNSFYQAFLIL 883
               + +   P  ++  + GQ++E+  +   L +    AL  +  ++     S+ Q  +I+
Sbjct: 835  FMPVLKQKYP-HIDTSLDGQSQEEADAIWGLLQGLFFALFTIYALMAIPLKSYSQPMIIM 893

Query: 884  TAVIFSTVGVFAGLLIFQKPFGIIMSGIGVIALAGIVVNNNIVLIDTYNQLLKRGLSREE 943
            + + F  +G   G L+       ++S  G+IALAG+VVN++++L+D  N+   +G +  E
Sbjct: 894  SVIPFGMIGAIIGHLLLGLSLS-VLSLCGIIALAGVVVNDSLILVDFVNRARAQGFALRE 952

Query: 944  AILRTGVQRLRPVLLTTVTTILGLLPMVLEMNIDIINQKIEFGAPSTQWWSQLATAVAGG 1003
            A++  G  R R ++LT++TT  GL+P++LE ++              Q    +AT++A G
Sbjct: 953  AVVNAGCFRFRAIILTSLTTFFGLVPIILERSL------------QAQIVIPMATSLAFG 1000

Query: 1004 LAFATVLTLVLTPCLLML 1021
            + F+TV+TL+L P L ++
Sbjct: 1001 ILFSTVVTLILVPLLYVI 1018