Pairwise Alignments

Query, 1039 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1034 a.a., AcrB/AcrD/AcrF family protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  319 bits (817), Expect = 7e-91
 Identities = 259/1058 (24%), Positives = 488/1058 (46%), Gaps = 56/1058 (5%)

Query: 4    LIDAALSRTRTMLTLLVFILVAGVATYLTIPKESSPDVTIPIIYVSVSHQGISPSDAERL 63
            L D ++ R      + + ++  G+  +  +P    P +  P++ +  +++G S S  E  
Sbjct: 3    LTDLSVKRPVFASVISLLLIAFGLVAFDKLPLREYPHIDPPVVSIETNYRGASASVVESR 62

Query: 64   IVRPLEQEMRSIEGVKEMTATASEGHASVVLEFNVGVDLAKAMADVRDAVDLAKPKLPAD 123
            I + +E  +  +EG++ +++++S+G +SV LEFN+  D+  A  D+RD V      LP +
Sbjct: 63   ITQLVEDRVSGVEGIRHISSSSSDGRSSVTLEFNINRDIEAAANDIRDRVSSMLNNLPEE 122

Query: 124  SDEPTVNEVTLAAEQPV-LSVVLYGTVPERTTVLIARQLRDKLESFRQILSVDIAGDREE 182
            +D P + +     E  + L++V         T    R L D+  +   +  + + G +  
Sbjct: 123  ADPPEIRKANGGDEVIMWLNLVSDSMNTLELTDYANRYLADRFSAVDGVAMLRLGGGKVY 182

Query: 183  IVEIIVDPLLMESYGLDQSDIYNLIALNNRVVAAGFVDTGYGRFSVKVPSVFESLKDVLE 242
             + I VD   + +  L  +DI + +   N  + AG V++    F+V++   F + +D   
Sbjct: 183  ALRIWVDRQALAARNLTVADIESKLRSENVELPAGSVESKERHFTVRLERTFRTSEDFAN 242

Query: 243  LPI-KVEGKQVITFGDVATVRKSFRDPESFARLDGKPAIVLDIKKRSGENIIETVELVKA 301
            L + + +   ++  GDVA +     +     R + +  I L + K+S  N +E    V  
Sbjct: 243  LVLAQGDDGYLVKLGDVAKIELGSEEERIMFRGNRESMIGLGVTKQSTANTLEVARAVNK 302

Query: 302  VLGEAQARDDWPNNLLVKTIWDESEDVKLMLNDLQNNILSAIILVVVVIIAILG-VRTSL 360
            ++   Q     P  + +K  +D S  ++  + ++   ++ A++LV++VI   LG V   L
Sbjct: 303  LVD--QINPTLPPGMEIKRSYDSSVFIEASIKEVYTTLIIAMLLVILVIYLFLGSVHAML 360

Query: 361  LVGVSIPGSFLTGLLVLAVFGLTVNIVVLFALIMAVGMLVDGAIVVTEFADRRMQEGMHR 420
            +  V++P S L   +VL   G T+N++ L A+I+A+GM+VD AIV+ E   RR++EG   
Sbjct: 361  IPAVTVPVSLLGTFIVLYALGYTINLLTLLAMILAIGMVVDDAIVMLENIHRRIEEGESP 420

Query: 421  SEAYRDAAKRMAWPITASTATTLAAFAPLLFWPDVTGEFMKYLPLTLMATLTASLVMALL 480
              A    A+ +A+ + A+T   +A F P+ F     G+  K   +T+ A +  S ++AL 
Sbjct: 421  LVASFLGAREVAFAVVATTLVLVAVFMPITFLEGDLGKLFKEFAVTMSAAVMFSSLVALS 480

Query: 481  FVPVLGSLFGRPQKVTQANQARMVALHNG-DFSQATGITKAYYSTLAIAIRHPIKILCGA 539
              P++ S   RP   T  +   +  +  G D+ + T     Y S+L   IRHP+ +   +
Sbjct: 481  LSPMMCSKLLRP---TSESSWLVKKVDKGMDWLEHT-----YRSSLERTIRHPLAV---S 529

Query: 540  LLMSAAIAFA-YGKAGLGAEFFPEVDPPFFSVKVRSYGDLSLNEKDRIMSDIEQ---VML 595
            L + AA+  + +    +  EF P  D     + V      S    ++ M+++E+    M+
Sbjct: 530  LTVIAALGLSVWMMQKVPQEFAPREDRGSMFLMVNGPQGASYEYIEKYMNEVEERLMPMV 589

Query: 596  GHDEFESVYTRT------GGDDEIGVVQITPVDWQYRRSVKAIIEELEQVTDTFPGVEIE 649
               E + +  R         D   G+  I   DW  RR+   I+ ++        GV+  
Sbjct: 590  ESGEIKRLLIRAPRGFGRSADFSNGMAIIVLEDWSARRNAFDIMNDIRGKLSDLAGVQ-- 647

Query: 650  YKFP----DAGPPVEHDLEIEISARVADDLDKAAQQVRLWAEANPALTNLSDNGSKPGID 705
              FP      G  V   ++  I     ++L +    +   A  NP L  L  +  +    
Sbjct: 648  -AFPIMRQGFGRGVGKPVQFVIGGPSYEELAQWRDILMAKAAENPKLLALDHDYKETKPQ 706

Query: 706  WKIDIRRDDASRFAADATLVGNTVQFVTNGLKIGDYLPDDSDEEVDILVR----YPSEYR 761
            +++ I RD A+      + +G T++ +     +  ++ D   EE D+++       +  +
Sbjct: 707  FRVVIDRDRAADLGVSISHIGRTLESMLGSRLVTTFMRD--GEEYDVIIEGDRAKQNTAQ 764

Query: 762  DIGRFDQLRVKTAQGLVPLTNFAQIIPEQKQDTIHRVDGRRVISVMADLKEGYNLALELP 821
            D+     +R    + L+PL+N   +       +++R +  R I++ A+L +GY+L   L 
Sbjct: 765  DLSNI-YVRSDRTRELIPLSNLVHVQEFADASSLNRYNRMRAITIEANLADGYSLGEALD 823

Query: 822  AIEQALRELNLPSSVEFRIRGQNEEQEHSAVFLEKAFMVALAAMAIILITQFNSFYQAFL 881
             +   +R   LP+      +GQ+ + + S   +   F++AL  + ++L  QF S+    +
Sbjct: 824  YLNDTVRTY-LPAEAVVSYKGQSLDYQESGNSMYFVFVLALGVVFLVLAAQFESYIHPAV 882

Query: 882  ILTAVIFSTVGVFAGLLIFQKPFGIIMSGIGVIALAGIVVNNNIVLIDTYNQLLKRGLSR 941
            I+  V  +T+G   GL +  +    I S IG+I L G+   N I++++  NQL  RG+  
Sbjct: 883  IMLTVPLATLGALIGLWLTGQTIN-IYSQIGIIMLVGLAAKNGILIVEFANQLRDRGVDF 941

Query: 942  EEAILRTGVQRLRPVLLTTVTTILGLLPMVLEMNIDIINQKIEFGAPSTQWWSQLATAVA 1001
             EA+L    QRLRP+L+T +TT  G +P+V+        + +            +   V 
Sbjct: 942  IEALLTASTQRLRPILMTGITTAAGAVPLVMAQGAGAETRFV------------IGVVVL 989

Query: 1002 GGLAFATVLTLVLTPCLLMLGRRRKGVSEDEAPQDAQS 1039
             G+  AT+ TL++ P    L  R  G S D   Q  ++
Sbjct: 990  SGIILATIFTLMVIPTAYALFARHSG-SPDAVAQKLEA 1026