Pairwise Alignments

Query, 1039 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1019 a.a., AcrB/AcrD/AcrF family protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  315 bits (807), Expect = 1e-89
 Identities = 264/1034 (25%), Positives = 489/1034 (47%), Gaps = 63/1034 (6%)

Query: 8    ALSRTRTMLTLLVFILVAGVATYLTIPKESSPDVTIPIIYVSVSHQGISPSDAERLIVRP 67
            A+ R  T +   V IL+ G+A+   +P E  P + IP + V V ++G +P++ ER I R 
Sbjct: 7    AVRRPVTTVMCFVAILLFGMASTRLLPLELFPGIDIPQVMVQVPYKGSTPAEVERDITRV 66

Query: 68   LEQEMRSIEGVKEMTATASEGHASVVLEFNVGVDLAKAMADVRDAVDLAKPKLPADSDEP 127
            LE+ + ++ G+++MT+ +S+  A + L    G + A    + R+ VD  +  LP D +  
Sbjct: 67   LEESLATMSGIEKMTSESSQDGAFIELSMKWGENTATKSLEAREKVDAVRHLLPKDVERV 126

Query: 128  TVNEVTLAAEQPVLSV-VLYGTVPERTTVLIARQLRDKLESFRQILSVDIAGDREEIVEI 186
             + + +  ++ P+ ++ +           L+ +QLR  LE    +  V + G  ++ + I
Sbjct: 127  FIQQFS-TSDMPIFNLRISSDRELSGAYDLLEKQLRQPLERVEGVSQVTLYGVEQKQISI 185

Query: 187  IVDPLLMESYGLDQSDIYNLIALNNRVVAAGFVDTGYGRFSVKVPSVFESLKDVLELPIK 246
             VD  L+ + G+  +++   +   N V+A G +      + V     F SLK++ +L + 
Sbjct: 186  RVDADLLAASGISSAELNRRLQAENFVIAGGTLRQDKSVYQVSPKGEFRSLKEIEDLVL- 244

Query: 247  VEGKQVITFGDVATVRKSFRDPESFARLDGKPAIVLDIKKRSGENIIETVELVKAVLGEA 306
                + +  GD+A +     +      LD + A+ LD+ K SG N++E    V  V+ E 
Sbjct: 245  ---TRGVRLGDIARINYELPERIEGRHLDQRYAVGLDVFKESGANLVEVSARVMRVIEEV 301

Query: 307  QARDDWPNNLLVKTIWDESEDVKLMLNDL-QNNILSAIILVVVVIIAILGVRTSLLVGVS 365
            +A D   + + +  + D++E VK  L DL    ++ A +   V+ + +  +  +L+V  S
Sbjct: 302  KA-DKQFSGIKLFIMEDQAEGVKSSLWDLMMAGLIGAALSFAVLYLFLRNMGMTLIVVSS 360

Query: 366  IPGSFLTGLLVLAVFGLTVNIVVLFALIMAVGMLVDGAIVVTEFADRRMQEGMHRS--EA 423
            +P S    L  + + G ++NI+ +  L++AVGML+D A+VVTE   +  Q+ +H S  +A
Sbjct: 361  VPISICMTLAAMYLLGYSLNILSMMGLLLAVGMLIDNAVVVTESVLQEKQKELHESKDKA 420

Query: 424  YRDAAKRMAWPITASTATTLAAFAPLLFWPDV-TGEFMKYLPLTLMATLTASLVMALLFV 482
                  ++A  + A T TT   F P +F   V    F++++ + +  +L ASL++A   +
Sbjct: 421  VLAGVDKVALAVLAGTLTTAIVFFPNIFGAKVQLTIFLEHVAIAICISLGASLLVAKTLI 480

Query: 483  PVLGSLFGRPQKVTQANQARMVALHNGDFSQATGITKAYYSTLAIAIRHPIKILCGALLM 542
            P++                  + +H+ D +Q + + + Y  +L   + HP      A+LM
Sbjct: 481  PLM---------------LTRIHIHHEDKTQKSRVQRFYEESLNWVLTHPKWSTFIAVLM 525

Query: 543  SAAIAFAYGKAGLGAEFFPEVDPPFFSVKVRSYGDLSLNEKDRIMSDIEQVMLGHDE--- 599
             A+ A          E        F + ++     L++ E   +++++E  +  H E   
Sbjct: 526  LASTALPLANVKQDQEDGANKQRLFINYQIEGRHALAVTE--AVVAEMESYLYAHKEEFF 583

Query: 600  FESVYTRTGGDDEIGVVQITPVDWQYRRSVKAIIEELEQ-VTDTFPGVEIEYKFPDAGPP 658
             +SVY+    +     V        +++  +  +E L++ + + FP      KF  A P 
Sbjct: 584  IDSVYSYYNPERASSTV-------LFKKGAEFDLEALKKSMREGFP------KFSIAKPQ 630

Query: 659  V-----EHDLEIEISARVADDLDKAAQQVRLWAEANPALTNLSDNGSKPGIDWKIDIRRD 713
                     + + ++ R   +L + +++      A   L +++   +    +  I + RD
Sbjct: 631  FGWSNDRQGVRVTLTGRSTSELIRLSEEALPMLSAIEGLEDVNSEVNGAQQEVLIRVNRD 690

Query: 714  DASRFAADATLVGNTVQFVTNGLKIGDYLPDDSDEEVDILVRYPSEYRDIGRFDQLRV-K 772
             A+R    A+ +   +     G  +  +  D S E    L    S  + + +  QL V K
Sbjct: 691  MAARLGTQASDIARAIATALRGQMLRSFRHDPSGEIRIELAYEKSWQQSLEKLKQLPVLK 750

Query: 773  TAQGLVPLTNFAQIIPEQKQDTIHRVDGRRVISVMADLKEGYNLALELPAIEQALRELNL 832
              + +  L++ A++    + DTI   + +  +S+ A++ EG         I+QA+  LNL
Sbjct: 751  IDERVYSLSSLAEVDIAPRFDTIRHFNRKTALSIGANV-EGITTEEAQEKIKQAMSHLNL 809

Query: 833  PSSVEFRIRGQNEEQEHSAVFLEKAFMVALAAMAIILITQFNSFYQAFLILTAVIFSTVG 892
            P   E+ +RG  E Q+     +    ++A+A + I++   F S      I+T+++FS  G
Sbjct: 810  PHGYEYSLRGGFERQDEDQQIMVVNMLLAVAMIYIVMAALFESLLLPSAIITSILFSITG 869

Query: 893  VFAGLLIFQKPFGIIMSGIGVIALAGIVVNNNIVLIDTYNQLLKRGLSREEAILRTGVQR 952
            VF  L +   P G +M+ IG++ L GIVVNN IVL+D  NQ+          I    + R
Sbjct: 870  VFWALWLTGTPNG-VMAMIGILILMGIVVNNGIVLVDQINQMTPSLEELSATIHAVCITR 928

Query: 953  LRPVLLTTVTTILGLLPMVLEMNIDIINQKIEFGAPSTQWWSQLATAVAGGLAFATVLTL 1012
            LRPVL+T  TT+LGL+P+ +       + +I  G P    +  +A A+ GGL+F+TV +L
Sbjct: 929  LRPVLMTVGTTVLGLVPLAMG------DTQIGGGGPP---YYPMAIAIIGGLSFSTVTSL 979

Query: 1013 VLTP-CLLMLGRRR 1025
             L P C   L R R
Sbjct: 980  FLVPLCYQALYRLR 993