Pairwise Alignments

Query, 1039 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1028 a.a., AcrB/AcrD/AcrF family transporter (RefSeq) from Shewanella amazonensis SB2B

 Score =  265 bits (676), Expect = 2e-74
 Identities = 253/1044 (24%), Positives = 464/1044 (44%), Gaps = 85/1044 (8%)

Query: 15   MLTLLVFILVAGVATYLTIPKESSPDVTIPIIYVSVSHQGISPSDAERLIVRPLEQEMRS 74
            M TL+  +L+ G   +L + +   P  TI    V   + G + ++ E  +  P+E+ +++
Sbjct: 16   MFTLI--LLLGGSVAFLGLGQLEDPPFTIKDAVVITLYPGATSTEVEEEVTYPVEKAIQA 73

Query: 75   IEGVKEMTATASEG--HASVVLEFNVGVD-LAKAMADVRDAVDLAKPKLPADSDEPTVNE 131
            +  V ++ + ++ G    +V ++   G D L +   ++R  V+     LP  +  P VN+
Sbjct: 74   LPYVDKIKSLSTSGLSQITVTMKNTYGPDQLPQIWDELRRKVNDMAASLPPGAQHPMVND 133

Query: 132  VTLAAEQPVLSVVLYGTVPERTTVLIARQLRDKLESFRQILSVDIAGDREEIVEIIVDPL 191
                    ++ ++       R        ++ +LE    +  V +AG+++E + + +   
Sbjct: 134  -DFGDVYGIMLMITGKDFSYRELKDYVDYVKRELELVPGVGKVSLAGEQKEQIFVEMSVN 192

Query: 192  LMESYGLDQSDIYNLIALNNRVVAAGFVDTGYGRFSVKVPSVFESLKDVLELPIK-VEGK 250
               S  LD + I NL+   N V  AG +        ++      S++++ EL I   +G 
Sbjct: 193  KAASSNLDPNLIANLLNSQNMVSDAGNIQVSGDNLKIRTSGSSRSVEELQELIIPGTQGD 252

Query: 251  QVITFGDVATVRKSFRD-PESFARLDGKPAIVLDIKKRSGENIIETVELVKAVLGEAQAR 309
            ++I   DVATVR+ +++ P +    + + AI L I   SG N++   + V   L  AQ  
Sbjct: 253  KLIYLKDVATVRRGYQEIPTNVLSYNRERAINLGISFSSGVNVVAVGKAVDDKL--AQID 310

Query: 310  DDWPNNLLVKTIWDESEDVKLMLNDLQNNILSAIILVVVVIIAILGVRTSLLVGVSIPGS 369
               P  + ++T++++  +V   +     N+++A+++V+ V++  +GV++ +L+G+ +  +
Sbjct: 311  SARPAGIKIETMYNQPVEVDNSVGSFVWNLIAAVVIVIGVLLFFMGVKSGILIGLILFLT 370

Query: 370  FLTGLLVLAVFGLTVNIVVLFALIMAVGMLVDGAIVVTEFADRRMQEGMHRSEAYRDAAK 429
             L   +++    + +  + L ALI+A+GMLVD AIVV E      Q+G    EA     K
Sbjct: 371  CLGTFVLMLQAEIELQRISLGALIIALGMLVDNAIVVVEGILIGRQQGKTTLEASDAIVK 430

Query: 430  RMAWPITASTATTLAAFAPLLFWPDVTGEFMKYLPLTLMATLTASLVMALLFVPVLGSLF 489
            +  WP+  +T   + AFAP+   PD TGEF   L   L+ +L  S + A+   P   SLF
Sbjct: 431  QTMWPLLGATVIAITAFAPIGLSPDSTGEFAGSLFWVLLFSLFLSWITAITITPFFASLF 490

Query: 490  GRPQKVTQANQARMVALHNGDFSQATGITKAYYSTLAIAIRHPIKILCGALL--MSAAIA 547
                K  +  + +    + G F         Y   L + +R+    +   +L  +++ + 
Sbjct: 491  -FGDKGEEQLEGQTKDPYGGAF------FTLYKVALDVCMRYRFISVIAVVLAFVASVVG 543

Query: 548  FAYGKAGLGAEFFPEVDPPFFSVKVRSYGDLSLNEKDRIMSDIEQ--------------V 593
            F Y K      FFP    P F V V       + E  RI++ +E               V
Sbjct: 544  FGYVK----QSFFPPSTTPIFLVDVWLPEGTDIRETQRIVTAMEDKAAQLADVEFVASTV 599

Query: 594  MLGHDEFESVYTRTGGDDEIGVVQITPVDWQYRRSVKAIIEELEQVTDTFPGVEIEYKFP 653
              G   F   Y         G + I    ++    V  + +   ++   FP  ++++K  
Sbjct: 600  GKGFPRFMLTYAPEKNYASYGQIAIRTSAFETLEGV--MTQFRREMEAGFPQTQLKFKRL 657

Query: 654  DAGPPVEHDLEIEISARVADDLDKAAQQVRLWAEANPALTNLSDNGSKPGIDWKIDIR-- 711
            + GP  +  +E  IS    D L     +V+    A P   N+         DW+  ++  
Sbjct: 658  EVGPSTDAKIEARISGPDPDVLRTLGAEVQAVFAATPGTVNVRH-------DWRERVKYI 710

Query: 712  -----RDDASRFAADATLVGNTVQFVTNGLKIGDYLPDDSDEEVDILVRYPSEYR-DIGR 765
                    A R     + V   ++F   GL+IG Y   +    + I+ R P + R DI  
Sbjct: 711  APRFNETQARRLGIVKSEVDKALKFSFAGLQIGVY--REGTNLLSIVGRLPDDERVDIES 768

Query: 766  FDQLRV--KTAQGLVPLTNFAQIIPEQKQD-TIHRVDGRRVISVMADLKEGYNLALELPA 822
             + +R+       LVPL         + +D  I R D +R ++V AD    Y+L   LPA
Sbjct: 769  MESIRIWSPVLNTLVPLQQVVDGFEVKFEDPIIQRRDRKRTLTVFADADFEYDL---LPA 825

Query: 823  -----IEQALRELNLPSSVEFRIRGQNEEQEHSAVFLEKAFMVALAAMAIILITQFNSFY 877
                 +   +  +++P   E    G+ E  + +   L     +    M ++ +  FNS  
Sbjct: 826  ELFAKVRPQVEAISMPPGYELVWGGEFESSQDAQESLFAILPMGFLFMFLVTVFLFNSVR 885

Query: 878  QAFLILTAVIFSTVGVFAGLLIFQKPFGIIMSGIGVIALAGIVVNNNIVLIDTYNQLLKR 937
            +  +I   V  + +G+  GLL+  KPF   M+ +G+++L+G+++ N IVL+D  N  +  
Sbjct: 886  KPLVIWACVPLAIIGITLGLLVLDKPFS-FMALLGMLSLSGMLLKNGIVLLDQINLEINE 944

Query: 938  GLSREEAILRTGVQRLRPVLLTTVTTILGLLPMVLEMNIDIINQKIEFGAPSTQWWSQLA 997
            G    +A+  + V R+RPV +  VTTILG+LP++ +                  ++  +A
Sbjct: 945  GKEPFQAVFESTVSRVRPVCMAAVTTILGMLPLITD-----------------AFFESMA 987

Query: 998  TAVAGGLAFATVLTLVLTPCLLML 1021
              V  GL  ATVLTL++ P   ++
Sbjct: 988  AVVMFGLGVATVLTLLIVPVFYII 1011