Pairwise Alignments

Query, 1039 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1051 a.a., efflux RND transporter permease subunit from Rhodopseudomonas palustris CGA009

 Score =  311 bits (798), Expect = 1e-88
 Identities = 263/1051 (25%), Positives = 468/1051 (44%), Gaps = 95/1051 (9%)

Query: 8    ALSRTRTMLTLLVFILVAGVATYLTIPKESSPDVTIPIIYVSVSHQGISPSDAERLIVRP 67
            A++    ML +++ I VAG+ +Y  + +   P  TI +  V+ +  G +  + +  +   
Sbjct: 10   AVAHPSLMLFVILMISVAGLLSYQRLGRAEDPSYTIKVAVVTATWPGATAEEMQLQVADR 69

Query: 68   LEQEMRSIEGVKEMTATASEGHASVVLEFNVGVDLA----------KAMADVRDAVDLAK 117
            +E++++ +    ++T  +  G  +  +EF      A          K MADV       K
Sbjct: 70   IEKKLQELPWFDKVTTYSKPGFTAAQMEFRDTTPPAQIPWLFYLIRKKMADV-------K 122

Query: 118  PKLPADSDEPTVNEVTLAAEQPVLSVVLYGTVPERTTVLI----ARQLRDKLESFRQILS 173
            P LP     P VN+     E   +  ++Y    +     +    A Q+R +L     +  
Sbjct: 123  PDLPDGVAGPEVND-----EYGDVDSIVYTLRSDSADYAVLKRMAEQVRQRLLKVPNVSK 177

Query: 174  VDIAGDREEIVEIIVDPLLMESYGLDQSDIYNLIALNNRVVAAGFVDTGYGRFSVKVPSV 233
            V I G ++E + +  D + + + G+    I++ +A  N +   G V T   R  ++V   
Sbjct: 178  VTIYGTQDERIFVDFDHVKLANLGIAPRAIFDSLAKQNDLAPVGMVQTQSTRIPLRVSGA 237

Query: 234  FESLKDVLELPIKVEGKQVITFGDVATVRKSFRDPESF-ARLDGKPAIVLDIKKRSGENI 292
            F+ ++ V E PI   G  VI  GD+ATV + F DP  F  R  G PA+ + I  R G NI
Sbjct: 238  FDGVRAVEETPIASNGT-VIRLGDIATVSRGFVDPPQFLVRQRGVPALAIGIVMRKGANI 296

Query: 293  IETVELVKAVLGEAQARDDWPNNLLVKTIWDESEDVKLMLNDLQNNILSAIILVVVVIIA 352
            +E    V+A + E +     P  +  + I ++   V+  + D   + + A+ +V+ V   
Sbjct: 297  LELGADVEASMAEVERAT--PVGVTFERIANQPAVVRDAVGDFMRSFVEALAIVLFVSFV 354

Query: 353  ILGVRTSLLVGVSIPGSFLTGLLVLAVFGLTVNIVVLFALIMAVGMLVDGAIVVTEFADR 412
             LG R  ++V  S+P        ++   G+ ++ + L ALI+A+G+LVD AI+  E    
Sbjct: 355  SLGWRVGIVVATSVPLVLGIVFTLMLTIGIDLHRISLGALIIALGLLVDDAIIAVEMMVV 414

Query: 413  RMQEGMHRSEAYRDAAKRMAWPITASTATTLAAFAPLLFWPDVTGEFMKYLPLTLMATLT 472
            +M++G  R+ A   A +  A+P+   T  T A F P+      TGE+   +   +   L 
Sbjct: 415  KMEQGFDRARAASFAWESTAFPMLTGTLVTAAGFLPVGMAASGTGEYAGSIFWVVGIALL 474

Query: 473  ASLVMALLFVPVLGSLFGRPQKVTQANQARMVALHNGDFSQATGITKAYYSTLAIAIRHP 532
            AS  +A++  P LG +             R ++         +G+ + + S +   I H 
Sbjct: 475  ASWAVAVILTPYLGFVL----------LPRSLSTGTAHAVYDSGLYRRFRSVVTWCIHHR 524

Query: 533  IKILCGALLMSAAIAFAYGKAGLGAEFFPEVDPPFFSVKVRSYGDLSLNEKDRIMSDIEQ 592
            + I+ G  + + AI+   G   +  +FFP  D     V++R  G   +       +  E 
Sbjct: 525  L-IVIGITIAAFAISIV-GFGKIQRQFFPTSDRTELFVELRLPGGSGIEATLVNANQAEA 582

Query: 593  VMLGHDEFESVYTRTG--------------GDDEIGVVQITPVDWQYRRSVKAIIEELEQ 638
            ++ G D+  +  T  G               ++  G + I   D   R  VK  +E  + 
Sbjct: 583  LVAGDDDVVTWSTYVGKGPPRFLLNVNPELPNESYGELVIVTKDSAARERVKRKVE--QA 640

Query: 639  VTD-TFPGVEIEYKFPDAGPPVEHDLEIEISARVADDLDKAAQQVRLWAEANPALTNLSD 697
            V D    G  +  +    GPP++  ++  +     + +   A QVR     NP       
Sbjct: 641  VADGAIAGARVRVRRLAYGPPIKFPVQFRVIGEDPNTVRSIAYQVRDIMRGNP------- 693

Query: 698  NGSKPGIDW-------KIDIRRDDASRFAADATLVGNTVQFVTNGLKIGDYLPDDSDEEV 750
            N  +P +DW       ++ + +D A     D   +  T+Q +  G  +   + D +++ V
Sbjct: 694  NVIEPQLDWNEQMPSVRLVVDQDRARALGLDPQTISQTLQMLMTGAPV-TTVRDRTEKVV 752

Query: 751  DILVRYPSEYRDIGRFDQLRVKTAQGL-VPLTNFAQIIPEQKQDTIHRVDGRRVISVMAD 809
             +     ++  D+G  D L V +  G+ VPL+  A+I    ++    R D    I+V +D
Sbjct: 753  VVARAIAAQRNDLGAIDDLTVLSRNGVPVPLSQIAEIREGHEEAIQWRRDRDMAITVRSD 812

Query: 810  LKEGYNLALELPAIEQALREL--NLPSSVEFRIRGQNEEQEHSAVFLEKAFMVALAAMAI 867
            +++G         +  AL +L  +LP+     + G  E+   +   L       L  M  
Sbjct: 813  VRDGVQAPFVSSMVWAALADLRQHLPAGYRIELGGAIEDSSKANGALFAVVPAMLVVMLT 872

Query: 868  ILITQFNSFYQAFLILTAVIFSTVGVFAGLLIFQKPFGIIMSGIGVIALAGIVVNNNIVL 927
            +L+ Q  SF +  L+L       +G  AGLL+F KPFG + + +G+IALAG+++ N+++L
Sbjct: 873  VLMIQLQSFAKLALVLLTAPLGLIGACAGLLLFGKPFGFV-ALLGLIALAGMIIRNSVIL 931

Query: 928  IDTYNQLLKRGLSREEAILRTGVQRLRPVLLTTVTTILGLLPMVLEMNIDIINQKIEFGA 987
            +D   Q +  G  R+EAI+   V+R RPV+LT ++ +L ++P+                 
Sbjct: 932  VDQIEQDIAAGHPRDEAIIGATVRRARPVVLTALSAVLAMIPLT---------------- 975

Query: 988  PSTQWWSQLATAVAGGLAFATVLTLVLTPCL 1018
              + +W  +A A+ GGL  ATVLTL+  P L
Sbjct: 976  -RSSFWGPMAVAIMGGLLVATVLTLLFLPAL 1005