Pairwise Alignments

Query, 1039 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1018 a.a., efflux RND transporter permease subunit from Parabacteroides merdae CL09T00C40

 Score =  315 bits (806), Expect = 1e-89
 Identities = 258/1035 (24%), Positives = 488/1035 (47%), Gaps = 55/1035 (5%)

Query: 1    MFTLIDAALSRTRTMLTLLVFILVAGVATYLTIPKESSPDVTIPIIYVSVSHQGISPSDA 60
            M  + + ++ R      + + +L+ G+  Y  +     P V  PII V+V++ G +    
Sbjct: 1    MANISEISIKRPVLSTVMTIILLLFGMIGYKFLGVREFPSVDNPIISVNVTYPGANAEVI 60

Query: 61   ERLIVRPLEQEMRSIEGVKEMTATASEGHASVVLEFNVGVDLAKAMADVRDAVDLAKPKL 120
               I  PLEQ +  I G++ +++ +S+G   + +EF + VDL  A  DVRD V  A+  L
Sbjct: 61   MNQITEPLEQNINGIPGIRSLSSVSSQGSCRITVEFELSVDLETAANDVRDKVSRAQRYL 120

Query: 121  PADSDEPTVNEVTLAAEQPVLSVVLYGTVPERTTVLIARQL--RDKLESFRQILSVDIAG 178
            P D D PTV++    A  P++ + +  +      +    +L  +++L++   +  VDI G
Sbjct: 121  PRDCDPPTVSKADADAT-PIMQIGIRSSKRSLMELSEIAELTVKERLQTIPNVSGVDIWG 179

Query: 179  DREEIVEIIVDPLLMESYGLDQSDIYNLIALNNRVVAAGFVDTGYGRFSVKVPSVFESLK 238
             +   + + +DP+ M  YG+   D+ N +   N  + +G ++      S++   +  +  
Sbjct: 180  QKRYSMRLWLDPIKMAGYGITPLDVKNAVDAENVELPSGSIEGNTIDLSIRTLGLMHTAT 239

Query: 239  DVLELPIKVEGKQVITFGDVATVRKSFRDPESFARLDGKPAIVLDIKKRSGENIIETVEL 298
            +  +L IK +G  +I F DV     S  D  S  R +G+P ++  I  + G N IE  + 
Sbjct: 240  EFNDLIIKRDGDNIIRFQDVGRAEVSPEDLRSVMRKNGEPMVIDVIIPQPGANQIEIAD- 298

Query: 299  VKAVLGEAQARDDWPNNLLVKTIWDESEDVKLMLNDLQNNILSAIILVVVVIIAIL-GVR 357
             +A     Q + D P ++ V+ ++D +  ++  + +++  I  A +LVV++I   L   R
Sbjct: 299  -EAYKRIEQLKKDLPEDVTVEMVYDNTRFIRASIAEVEETIYVAFLLVVLIIFLFLRDWR 357

Query: 358  TSLLVGVSIPGSFLTGLLVLAVFGLTVNIVVLFALIMAVGMLVDGAIVVTEFADRRMQEG 417
             +L+  V IP S +    V+ V G ++N++ + A++++VG++VD AIV+ E    R+++G
Sbjct: 358  VTLVPVVVIPVSLVGAFFVMYVSGFSINVLTMLAVVLSVGLVVDDAIVMAENIYVRIEQG 417

Query: 418  MHRSEAYRDAAKRMAWPITASTATTLAAFAPLLFWPDVTGEFMKYLPLTLMATLTASLVM 477
            M   EA  D AK + + + ++T T ++ F P++F   +TG   K   + +  ++T S  +
Sbjct: 418  MEPKEAGIDGAKEIFFAVVSTTVTLVSVFLPIVFMEGMTGRLFKEFSIVIAGSVTISSFV 477

Query: 478  ALLFVPVLGSLFGRPQKVTQANQARMVALHNGDFSQATGITKAYYSTLAIAIRHPIKILC 537
            AL F P+L +   R ++    N+  +       F    G+   Y  +L   + H    + 
Sbjct: 478  ALTFTPMLATKLLRKRE----NKGWLYTKTEPFFE---GMNNIYAKSLNAFLNHKWWSIP 530

Query: 538  GALLMSAAIAFAYGKAGLGAEFFPEVDPPFFSVKVRSYGDLSLNEKDRIMSDIEQVMLGH 597
              +++  +I + +    + +E  P  D    S+ +R+    +    + I    +QV    
Sbjct: 531  IVVILFGSIGYFW--RTIRSELSPLEDRSSISINIRAQEGATF---EFIRDFTDQVAAMA 585

Query: 598  D----EFESVYTRTGGDDEIGVVQITPVDWQYRRSVK---AIIEELEQVTDTFPGVEIEY 650
            D    E +++  R    +    V +  +  + R  ++    + + +   T+    V+ + 
Sbjct: 586  DTLAPERQALTVRANNSNGYITVLLPDIKDRERSQMEIADVLSKNVRGKTEARAFVQQQS 645

Query: 651  KFPD--AGPPVEHDLEIEISARVADDLDKAAQQVRLWAEANPALTNLSDNGSKPGIDWKI 708
             F    AG PV++ L+     ++ + L    Q+V        A  NL    +KP  + +I
Sbjct: 646  TFGGRRAGMPVQYVLQATSLEKLQEYLPAFMQKVSESPVFQMADVNL--KFTKP--EARI 701

Query: 709  DIRRDDASRFAADATLVGNTVQFVTNGLKIGDYLPDDSDEEVDILVRYPSEYRDIG-RFD 767
            +I RD AS        +  T+Q+  +G ++G +    + ++  IL     + R+      
Sbjct: 702  EINRDKASSLGVSTRTIAQTLQYALSGQRMGYFYM--NGKQYQILGEINRQQRNTPLDLK 759

Query: 768  QLRVKTAQG-LVPLTNFAQIIPEQKQDTIHRVDGRRVISVMADLKEGYNLALELPAIEQA 826
             + V++  G ++ L N   +  +     ++R +     +V + L +GY +   L  +++ 
Sbjct: 760  SIYVRSDAGEMIQLDNLVTLKEDVAPPQLYRYNRFVSATVSSGLNKGYTIGDGLDEMDRI 819

Query: 827  LRELNLPSSVEFRIRGQNEEQEHSAVFLEKAFMVALAAMAIILITQFNSFYQAFLILTAV 886
              E  L +S    + G+++E   S+  L  A ++AL  + ++L  QF SF    +    V
Sbjct: 820  ASE-TLDNSFRTALSGESKEFRESSSSLMFAMILALFMIYLVLAAQFESFKDPLV----V 874

Query: 887  IFSTVGVFAGLLIFQKPFGI---IMSGIGVIALAGIVVNNNIVLIDTYNQLLKRGLSREE 943
            +F+     AG LIF     I   I S IG+I L G+V  N I++++  NQ  + GLS  E
Sbjct: 875  MFTVPLAIAGALIFMSYSDITMNIFSQIGIIMLIGLVAKNGILIVEFANQRQEAGLSMAE 934

Query: 944  AILRTGVQRLRPVLLTTVTTILGLLPMVLEMNIDIINQKIEFGAPSTQWWSQLATAVAGG 1003
            AI     QRLRP+L+T+++TILGL+P+V                   Q    +  AV GG
Sbjct: 935  AIRSASTQRLRPILMTSISTILGLVPLVYA------------SGEGAQGRIAMGIAVVGG 982

Query: 1004 LAFATVLTLVLTPCL 1018
            +  +T LTL + P +
Sbjct: 983  MIVSTFLTLFIVPAM 997



 Score = 64.7 bits (156), Expect = 3e-14
 Identities = 47/263 (17%), Positives = 121/263 (46%), Gaps = 8/263 (3%)

Query: 239  DVLELPIKVEGKQVITFGDVATVRKSFRDPESFARLDGKPAIVLDIKKRSGENIIETVEL 298
            D+  + ++ +  ++I   ++ T+++    P+ + R +   +  +      G  I + ++ 
Sbjct: 757  DLKSIYVRSDAGEMIQLDNLVTLKEDVAPPQLY-RYNRFVSATVSSGLNKGYTIGDGLDE 815

Query: 299  VKAVLGEAQARDDWPNNLLVKTIWDESEDVKLMLNDLQNNILSAIILVVVVIIAIL-GVR 357
            +  +  E        +N     +  ES++ +   + L   ++ A+ ++ +V+ A     +
Sbjct: 816  MDRIASETL------DNSFRTALSGESKEFRESSSSLMFAMILALFMIYLVLAAQFESFK 869

Query: 358  TSLLVGVSIPGSFLTGLLVLAVFGLTVNIVVLFALIMAVGMLVDGAIVVTEFADRRMQEG 417
              L+V  ++P +    L+ ++   +T+NI     +IM +G++    I++ EFA++R + G
Sbjct: 870  DPLVVMFTVPLAIAGALIFMSYSDITMNIFSQIGIIMLIGLVAKNGILIVEFANQRQEAG 929

Query: 418  MHRSEAYRDAAKRMAWPITASTATTLAAFAPLLFWPDVTGEFMKYLPLTLMATLTASLVM 477
            +  +EA R A+ +   PI  ++ +T+    PL++      +    + + ++  +  S  +
Sbjct: 930  LSMAEAIRSASTQRLRPILMTSISTILGLVPLVYASGEGAQGRIAMGIAVVGGMIVSTFL 989

Query: 478  ALLFVPVLGSLFGRPQKVTQANQ 500
             L  VP + S     ++    NQ
Sbjct: 990  TLFIVPAMYSFISTDRQSKINNQ 1012