Pairwise Alignments

Query, 1039 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1042 a.a., acriflavin resistance protein (RefSeq) from Shewanella loihica PV-4

 Score =  306 bits (783), Expect = 7e-87
 Identities = 261/1040 (25%), Positives = 475/1040 (45%), Gaps = 47/1040 (4%)

Query: 4    LIDAALSRTRTMLTLLVFILVAGVATYLTIPKESSPDVTIPIIYVSVSHQGISPSDAERL 63
            L D ++ R    L L + + V G+ ++  +     PDV  P++ V  S+ G S S  E  
Sbjct: 3    LSDVSVKRPVVALVLSLLLCVFGLVSFSKLAVREMPDVESPVVTVMTSYSGASASIMESQ 62

Query: 64   IVRPLEQEMRSIEGVKEMTATASEGHASVVLEFNVGVDLAKAMADVRDAVDLAKPKLPAD 123
            I   LE E+  I G+ E+T+    G + + + F++  +L + ++DVRDAV  A+ +LP +
Sbjct: 63   ITTVLEDELTGISGIDEITSVTRNGMSRITISFDLDWNLTEGVSDVRDAVARAQRRLPDE 122

Query: 124  SDEPTVNEVTLAAEQPVLSVVLYGTVPERT--TVLIARQLRDKLESFRQILSVDIAGDRE 181
            +DEP V++   + E P + + L  +  +RT  T    R L D+      + SV+I+G   
Sbjct: 123  ADEPIVSKDNGSGE-PSVYINLSSSTMDRTQLTDYAQRVLEDRFSLITGVSSVNISGGLY 181

Query: 182  EIVEIIVDPLLMESYGLDQSDIYNLIALNNRVVAAGFVDTGYGRFSVKVPSVFESLKDVL 241
            +++ + +DP LM   G+  +DI + +   N     G V       +V+   ++   +D  
Sbjct: 182  KVMYVQLDPKLMAGRGVTTTDITDALRSENVESPGGEVRNDTTVMTVRTARLYLHPEDFD 241

Query: 242  ELPIKVEGK-QVITFGDVATVRKSFRDPESFARLDGKPAIVLDIKKRSGENIIETVELVK 300
             L ++       I   DVA V     +  S  + DG P + L I  +S  N ++  + V+
Sbjct: 242  YLVVRTASDGSPIYLKDVARVFIGAENENSTFKSDGVPNLSLGIVAQSDANPLQVAQRVR 301

Query: 301  AVLGEAQARDDWPNNLLVKTIWDESEDVKLMLNDLQNNILSAIILVVVVIIAILG-VRTS 359
              + + Q     P    +   +D +  +   + ++ N +     LVV+V+   +G  R +
Sbjct: 302  EEVDKLQ--KFLPEGTQLSVDYDSTVFIDQSIGEVYNTLYITGALVVLVLYLFIGQARAT 359

Query: 360  LLVGVSIPGSFLTGLLVLAVFGLTVNIVVLFALIMAVGMLVDGAIVVTEFADRRMQEGMH 419
            L+  V++P S ++  +     G ++N++ L ALI+A+G++VD AIVV E     ++ G  
Sbjct: 360  LIPAVTVPVSLISAFIAANYLGYSINLLTLMALILAIGLVVDDAIVVVENIFHHIERGEP 419

Query: 420  RSEAYRDAAKRMAWPITASTATTLAAFAPLLFWPDVTGEFMKYLPLTLMATLTASLVMAL 479
               A    A+ + + + A+TA  +  F P+ F   + G       + L   +  S V+AL
Sbjct: 420  AILAAYKGAREVGFAVVATTAVLVMVFLPISFMDGMVGRLFTEFAVMLAMAVIFSSVIAL 479

Query: 480  LFVPVLGS-LFGRPQKVTQANQARMVALHNGDFSQATGITKAYYSTLAIAIRHPIKILCG 538
               PVLGS L  R  +    N+     L +  F++   +   Y   +A A+R+  ++   
Sbjct: 480  TLTPVLGSKLLKRKHRPKALNR-----LMDSGFAR---LEAWYRRAVAWAVRY--RLAAP 529

Query: 539  ALLMSAAIAFAYGKAGLGAEFFPEVDPPFFSVKVRSYGDLSLNEKDRIMSDIEQVML--- 595
             ++++  I        + A+  P+ D       V+     S N     M  +EQ ++   
Sbjct: 530  VVIVACVIGSGLLMNQVPAQLAPQEDRGVIFAFVKGAEGTSYNRMTSNMDIVEQRLMPLL 589

Query: 596  --GHDEFESVYTRTGG---DDEIGVVQITPVDWQYRR-SVKAIIEELEQVTDTFPGVEIE 649
              G  +  SV     G    D+ G V +   DWQ R  + +  +  + +     P V + 
Sbjct: 590  SQGVIKSFSVQAPAFGGRAGDQTGFVIMQLEDWQARDINAQQALAVVAKALKGIPDVMVR 649

Query: 650  YKFPDAGPPVEHDLEIEISARVADDLDKAAQQVRLWAEANPALTNLSDNGSKPGIDWKID 709
               P         ++  +     D+L K A +++  A+A+P +T    + ++   +  + 
Sbjct: 650  PMLPGFRGKSSEPVQFVLGGSDYDELFKWASKLKAIADASPIVTGADLDYAETTPELVVS 709

Query: 710  IRRDDASRFAADATLVGNTVQFVTNGLKIGDYLPDDSDEEVDILVRYPSE-YRDIGRFDQ 768
            + R  A+        V  T++ +  G     ++  +  EE D+ +R   E +  +    Q
Sbjct: 710  VDRQRAAELGISVAQVSQTLEVMLGGRSETSFI--ERGEEYDVYLRGKEESFNSMADLSQ 767

Query: 769  LRVKTAQG-LVPLTNFAQIIPEQKQDTIHRVDGRRVISVMADLKEGYNLALELPAIEQAL 827
            + ++ A G L+ L     I        +   + ++ I++ A+L EGY L   L  ++   
Sbjct: 768  IYMRAANGELITLDAITHIEEVASAHKLSHTNKQKSITLKANLGEGYTLGEALDFLDAKA 827

Query: 828  RELNLPSSVEFRIRGQNEEQEHSAVFLEKAFMVALAAMAIILITQFNSFYQAFLILTAVI 887
             E+ LP  +     G+++E + +   +   F +AL    ++L  QF SF    +++  V 
Sbjct: 828  IEI-LPGDISISYTGESKEFKENQSSVMLVFALALLVAYLVLAAQFESFINPLVVMLTVP 886

Query: 888  FSTVGVFAGLLIFQKPFGIIMSGIGVIALAGIVVNNNIVLIDTYNQLLKRGLSREEAILR 947
                G F GL +       I S IG+I L G+V  N I++++  NQL  RG S E+AIL 
Sbjct: 887  MGIFGGFIGLYLMGLGLN-IYSQIGMIMLIGMVTKNGILIVEFANQLRDRGASLEQAILD 945

Query: 948  TGVQRLRPVLLTTVTTILGLLPMVLEMNIDIINQKIEFGAPSTQWWSQLATAVAGGLAFA 1007
               +RLRP+L+T  TT++G +P++L             GA S    + + T V  G+AFA
Sbjct: 946  ASARRLRPILMTAFTTLVGAVPLILSS-----------GAGSESRIA-VGTVVFFGMAFA 993

Query: 1008 TVLTLVLTPCL--LMLGRRR 1025
            T++TL++ P +  L+ GR R
Sbjct: 994  TLVTLLVIPAMYRLISGRTR 1013