Pairwise Alignments

Query, 1039 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1040 a.a., hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) from Shewanella loihica PV-4

 Score =  269 bits (687), Expect = 9e-76
 Identities = 264/1055 (25%), Positives = 473/1055 (44%), Gaps = 95/1055 (9%)

Query: 14   TMLTL--LVFILVAGVATYLTIPKESSPDVTIPIIYVSVSHQGISPSDAERLIVRPLEQE 71
            T+LTL  L+ I +  VA +        P++  P + VS S+ G S    +  I +P+E E
Sbjct: 18   TVLTLVGLISIPILSVAEF--------PEIAPPQVSVSTSYSGASADIVKDTIAQPIEAE 69

Query: 72   MRSIEGVKEMTA-TASEGHASVVLEFNVGVDLAKAMADVRDAVDLAKPKLPADSDEPTVN 130
            +  +EG+  M + +A++G  S+ + F+VG D   A   V++ V  A P+LP   +E    
Sbjct: 70   VNGVEGMLYMQSKSANDGSYSLNVTFDVGTDADMAQVKVQNRVQQAMPRLP---EEVKRQ 126

Query: 131  EVTLAAEQPVLSVVLYGTVPERT------TVLIARQLRDKLESFRQILSVDIAGDREEIV 184
             V +  + P + +V+    P  T      T      ++D L     +  V + G  +  +
Sbjct: 127  GVKVEKQSPNILMVVNLVSPNETFDSLFITNYAGLNVKDALARQNGVSKVQVIGALDYAI 186

Query: 185  EIIVDPLLMESYGLDQSDIYNLIALNNRVVAAGFVDTGYGRFSVKVPSVFE-------SL 237
             I +DP  M S+G+  SD+   +   N  VAAG +    G   V     F+        L
Sbjct: 187  RIWLDPNQMASFGVTASDVIAALREQNIQVAAGRI----GAAPVDPQQQFQYTLQTKGRL 242

Query: 238  KDVLE-----LPIKVEGKQVITFGDVATVRKSFRDPESFARLDGKPAIVLDIKKRSGENI 292
            KD  E     +    +G +VI   DVA V    +  ++  +L+ KP+ ++ I +    N 
Sbjct: 243  KDPEEFGRVMIRANPDGSKVIV-SDVARVELGSQTYDAQGKLNNKPSAIIAIYQAPDANA 301

Query: 293  IETVELVKAVLGEAQARDDWPNNLLVKTIWDESEDVKLMLNDLQNNILSAIILVV-VVII 351
            +E  + +KA +    +R  +P++L  K ++D +E V+  + ++   +  ++ LVV VV I
Sbjct: 302  LEVAKAIKAEMDTLASR--FPDDLEYKVLYDTTEFVETSITEVVQTLFISVALVVFVVYI 359

Query: 352  AILGVRTSLLVGVSIPGSFLTGLLVLAVFGLTVNIVVLFALIMAVGMLVDGAIVVTEFAD 411
             +   R++L+ G++IP S +     L  FG+++N V LFALI+A+G++VD AIVV E   
Sbjct: 360  FLQDARSTLVPGIAIPVSLIGTFAFLLAFGMSINTVSLFALILAIGIVVDDAIVVVENVT 419

Query: 412  RRMQ-EGMHRSEAYRDAAKRMAWPITASTATTLAAFAPLLFWPDVTGEFMKYLPLTLMAT 470
            R M+ EG+  +EA   A K +  P+ A+T   LA FAP    P +TG+      +T+  +
Sbjct: 420  RLMEDEGLSPTEATSKAMKEVTGPVIATTLVLLAVFAPTAVMPGITGQMYAQFSVTICIS 479

Query: 471  LTASLVMALLFVPVL-GSLFGRPQKVTQANQARMVALHNGDFSQATGITKAYYSTLAIAI 529
            +  S V AL   P L  SL   P+K T         L N  F + TG    Y   ++  +
Sbjct: 480  VLISSVNALTLSPALCASLLKPPKKHTHG----FHHLFNTYFERFTG---GYMKLVSSLV 532

Query: 530  RHPIKILCGALLMSAAIAFAYGKAG-----LGAEFFPEVDPPFFSVKVRSYGDLSLNEKD 584
            R         +L+  A A   G  G     L + F P  D   F V ++     SLN  +
Sbjct: 533  RK-------LVLVGVAYACLIGVTGGIAKVLPSGFVPMEDKKAFMVDIQLPDGASLNRTE 585

Query: 585  RIMSDIEQVMLGHDEFESVYTRTG-------GDDEIGVVQITPVDWQYRRS----VKAII 633
             +M ++ ++       E+V   +G            G++ +T   W+ R S      AI+
Sbjct: 586  EVMRNLVKLTQEEPGVENVIHASGFSILTGSVSSNGGLMIVTLSTWEERDSPDMVEAAIV 645

Query: 634  EELEQVTDTFPGVEIEY----KFPDAGPPVEHDLEI-EISARVADDLDKAAQQVRLWAEA 688
             +L+      P V+         P  G     +  + +   R   +L    + + + A  
Sbjct: 646  AKLQAKYAANPSVKAMAFSLPPIPGVGSVGGFEFVLQDTQGRSPQELASVMRALIMKANG 705

Query: 689  NPALTNLSDNGSKPGIDWKIDIRRDDASRFAADATLVGNTVQFVTNGLKIGDYLPDDSDE 748
             P +     N         +D+ RD A         + +T+Q +   + + D+  +   +
Sbjct: 706  QPEIAMAFSNFRADVPQMYVDVDRDKAKALGISLNEIFSTMQTMLGSMYVNDF--NRFGK 763

Query: 749  EVDILVRYPSEYRDIGR-FDQLRVKTAQG-LVPLTNFAQIIPEQKQDTIHRVDGRRVISV 806
               ++++   E+R+  +      V++A G +VPL+   ++ P    D ++  +     ++
Sbjct: 764  VFRVILQAEGEFRNSDKDIASFYVRSASGEMVPLSTLVKVTPILGPDVMNAYNMFSSTTI 823

Query: 807  MADLKEGYNLALELPAIEQALRELNLPSSVEFRIRGQNEEQEHSAVFLEKAFMVALAAMA 866
                  G++    + A+E+A +E  LP+  +F   GQ  ++  +       F +AL    
Sbjct: 824  NGFPAPGFSSGDAIAAMERAAQE-TLPAGYKFEWTGQTYQEIKAGNLAPLIFALALVFTY 882

Query: 867  IILITQFNSFYQAFLILTAVIFSTVGVFAGLLIFQKPFGIIMSGIGVIALAGIVVNNNIV 926
            + L+ Q+ S+   F ++ AV  + +G F  +L+       + + IG++ L G+   N I+
Sbjct: 883  LFLVAQYESWSIPFAVMLAVPIAILGAFLNILLVGSELN-LYAQIGLVLLIGLACKNAIL 941

Query: 927  LIDTYNQLLKRGLSREEAILRTGVQRLRPVLLTTVTTILGLLPMVLEMNIDIINQKIEFG 986
            +++   QL + G S  +A       R R VL+T  + +LG+LP+V+             G
Sbjct: 942  IVEFAKQLREEGKSILDAAETAARLRFRAVLMTAFSFLLGVLPLVIATGA---------G 992

Query: 987  APSTQWWSQLATAVAGGLAFATVLTLVLTPCLLML 1021
            A S +    L  +V GG+  AT++  +L P   ++
Sbjct: 993  AGSRR---ALGYSVFGGMMAATLVGTLLVPVFYVI 1024