Pairwise Alignments

Query, 1039 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1024 a.a., acriflavin resistance protein (RefSeq) from Shewanella loihica PV-4

 Score =  295 bits (755), Expect = 1e-83
 Identities = 259/1033 (25%), Positives = 466/1033 (45%), Gaps = 78/1033 (7%)

Query: 20   VFILVAGVATYLTIPKESSPDVTIPIIYVSVSHQGISPSDAERLIVRPLEQEMRSIEGVK 79
            + +L+ G  +++++ +   P+ TI    V  ++ G SP   E  +  PLE  ++ ++GVK
Sbjct: 19   LLLLIGGSLSFMSLGQLEFPEFTIKEALVVTAYPGASPEQVEEEVTLPLEDALQQLDGVK 78

Query: 80   EMTATASEGHASVVLEFNVGVDLAKAMAD---VRDAVDLAKPKLPADSDEPTVNEVTLAA 136
             +T+  S G + + +E     D  K       VR  V   +  LP+ +  P V +     
Sbjct: 79   HITSINSAGLSQIQIEMEDKYDAEKLPQIWDLVRRKVSDTQGSLPSGAMTPQVID-DFGD 137

Query: 137  EQPVLSVVLYGTVPERTTVLIARQLRDKLESFRQILSVDIAGDREEIVEIIVDPLLMESY 196
               +L  +      ER     A  LR +L     I  V+IAG  ++ V + +    + + 
Sbjct: 138  VYGILLNLSGDGYSERELENYADFLRRELVLVDGIKRVNIAGIVDQQVVVEISTQKINAL 197

Query: 197  GLDQSDIYNLIALNNRVVAAGFVDTGYGRFSVKVPSVFESLKDVLELPIKVEGK-QVITF 255
            GL+Q  IY LI   N V  AG +  G  R  +     F+S++ +  L +   G  ++I  
Sbjct: 198  GLNQDYIYGLINSQNVVSNAGSIRVGDNRIRIHPTGEFDSVEALSRLVVSAPGSAKLIYL 257

Query: 256  GDVATVRKSFRD-PESFARLDGKPAIVLDIKKRSGENIIETVELVKAVLGEAQARDDWPN 314
            GD+A + K+  + P +     G  A+ + I   SG N+++  E V   +      D+ P 
Sbjct: 258  GDIANIYKAMDETPSNLYHSGGDMALSVGIAFSSGVNVVKVGEAVNQKM--MALSDELPV 315

Query: 315  NLLVKTIWDESEDVKLMLNDLQNNILSAIILVVVVIIAILGVRTSLLVGVSIPGSFLTGL 374
             +++ T++D+S+ V   +N    N+  +I +V+ V++  +G+R+ LL+G+ +  + L   
Sbjct: 316  GMMLTTVYDQSKMVDQTINGFLVNLAESIAIVIGVLLIFMGLRSGLLMGLVLLLTILGTF 375

Query: 375  LVLAVFGLTVNIVVLFALIMAVGMLVDGAIVVTEFADRRMQEGMHRSEAYRDAAKRMAWP 434
            +++ V  + + I+ L ALI+A+GMLVD AIVVTE     ++ G  R E  +    +  WP
Sbjct: 376  IMMKVLNIELQIISLGALIIALGMLVDNAIVVTEGIIIGLKRGQSRLETAKQVITQTQWP 435

Query: 435  ITASTATTLAAFAPLLFWPDVTGEFMKYLPLTLMATLTASLVMALLFVPVLGSLFGRPQK 494
            +  +T   + AFAP+    + TGEF   L L L+ +L  S + A+   P    L  +  +
Sbjct: 436  LLGATVIAIIAFAPIGLSDNATGEFCISLFLVLLISLFISWITAMTLTPFFCDLLFKDGE 495

Query: 495  VTQANQARMVALHNGDFSQATG-ITKAYYSTLAIAIRHPIKILCGALLMSAAIAFAYGKA 553
            +              D     G + + Y  +L++A+R     L   LL        +G+ 
Sbjct: 496  IPD----------EADSDPYKGWLFQLYRGSLSLAMRFRGLTLLVVLLALVGSVMGFGQ- 544

Query: 554  GLGAEFFPEVDPPFFSVKVRSYGDLSLNEKDRIMSDIEQVMLGHDEFE-----SVYTRTG 608
             +   FFP  + P F V V       +   + ++  IEQ ++   E +     ++ +  G
Sbjct: 545  -VKNVFFPASNTPIFFVDVWMPEGSDIKATEALLGRIEQDLMAEQEKQDLGLVNITSVVG 603

Query: 609  GDDEIGVVQITP-----------VDWQYRRSVKAIIEELEQ-VTDTFPGVEIEYKFPDAG 656
               +  V+   P           ++     ++ A +  LEQ +   +P  E  +K+ + G
Sbjct: 604  QGAQRFVLPYVPEKGYAAYGQLLIEMSNLETLNAYMRRLEQDLVQHYPEAEYRFKYMENG 663

Query: 657  PPVEHDLEIEISARVADDLDKAAQQVRLWAEANPALTNLSDNGSKPGIDWKIDIRRDDAS 716
            P     +E        + L + AQQ      A P+ T++  N       W+  +      
Sbjct: 664  PSPAAKIEARFYGEDPEVLRQLAQQASEIFLAEPSATSVRHN-------WRNQVTLVRPQ 716

Query: 717  RFAADATLVGNTVQFVTN-------GLKIGDYLPDDSDEEVDILVRYPSEYR-DIGRFDQ 768
               A A   G + Q + N       G  +G Y   ++   + I+ R P++ R +      
Sbjct: 717  LALAQARETGISKQDLDNALLTNFSGKHVGLY--RENSHLLPIIARAPADERLNADSISA 774

Query: 769  LRVKTAQG--LVPLTN-FAQIIPEQKQDTIHRVDGRRVISVMADLKEGYNLALE--LPAI 823
            L+V + +    VP++   +    E +   I R D +RVISV+AD   G N   +     +
Sbjct: 775  LQVWSTENNVFVPISQVVSDFTTEWEDPLIMRRDRKRVISVLADPLNGGNETADSVFRKL 834

Query: 824  EQALRELNLPSSVEFRIRGQNEEQEHSAVFLEKAFMVALAAMAIILITQFNSFYQAFLIL 883
               +  ++LP+  E    G+ E    +   +  +  +   AM +I +  FNS  Q  +I 
Sbjct: 835  RPKVEAISLPAGYELEWGGEYETSSEAQQSVFSSIPLGYLAMFLITVLLFNSVRQPLVIW 894

Query: 884  TAVIFSTVGVFAGLLIFQKPFGIIMSGIGVIALAGIVVNNNIVLIDTYNQLLKRGLSREE 943
              V  + +GV +GLL+F  PF   M+ +G+++L G+++ N IVL+D  N  L +G     
Sbjct: 895  FTVPLALIGVVSGLLLFDAPFS-FMALLGLLSLTGMIIKNGIVLVDQINLELSQGKDAYR 953

Query: 944  AILRTGVQRLRPVLLTTVTTILGLLPMVLEMNIDIINQKIEFGAPSTQWWSQLATAVAGG 1003
            A+  + V R+RPVL+  +TT+LG++P++ +                  ++  +A  +  G
Sbjct: 954  AVFDSSVSRVRPVLMAAITTMLGMIPLLPD-----------------AFFGSMAITIIFG 996

Query: 1004 LAFATVLTLVLTP 1016
            L FA+VLTLV+ P
Sbjct: 997  LGFASVLTLVVLP 1009